mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 1.91424205473924e-27 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
Summary |
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hyperlink | ||||||||||||
analysed issue | analysis result | |||||||||||||
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name of alteration | no title | |||||||||||||
alteration (phys. location) | chr17:46629593G>TN/A show variant in all transcripts IGV | |||||||||||||
HGNC symbol | HOXB3 | |||||||||||||
Ensembl transcript ID | ENST00000490677 | |||||||||||||
Genbank transcript ID | N/A | |||||||||||||
UniProt peptide | N/A | |||||||||||||
alteration type | single base exchange | |||||||||||||
alteration region | intron | |||||||||||||
DNA changes | g.52682C>A | |||||||||||||
AA changes | N/A | |||||||||||||
position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
frameshift | N/A | |||||||||||||
known variant | Reference ID: rs2229304
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regulatory features | DNase1, Open Chromatin, DNase1 Hypersensitive Site Gene Associated, Regulatory Feature, Gene associated regulatory feature H3K27ac, Histone, Histone 3 Lysine 27 Acetylation H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation H3K4ac, Histone, Histone 3 Lysine 4 Acetylation H3K4me2, Histone, Histone 3 Lysine 4 Di-Methylation H3K79me2, Histone, Histone 3 Lysine 79 di-methylation H3K9ac, Histone, Histone 3 Lysine 9 Acetylation | |||||||||||||
phyloP / phastCons |
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splice sites | no abrogation of potential splice sites | |||||||||||||
distance from splice site | 1053 | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
conservation protein level for non-synonymous changes | N/A | |||||||||||||
protein features | N/A | |||||||||||||
length of protein | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
position of stopcodon in wt / mu CDS | N/A | |||||||||||||
position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
position of start ATG in wt / mu cDNA | 139 / 139 | |||||||||||||
chromosome | 17 | |||||||||||||
strand | -1 | |||||||||||||
last intron/exon boundary | 188 | |||||||||||||
theoretical NMD boundary in CDS | cannot be calculated, too little distance between start ATG and last intron/exon boundary | |||||||||||||
length of CDS | 894 | |||||||||||||
coding sequence (CDS) position | N/A | |||||||||||||
cDNA position (for ins/del: last normal base / first normal base) | N/A | |||||||||||||
gDNA position (for ins/del: last normal base / first normal base) | 52682 | |||||||||||||
chromosomal position (for ins/del: last normal base / first normal base) | 46629593 | |||||||||||||
original gDNA sequence snippet | GGCCGGGTCTGGCCCCCGAGCCCCTGTCGGCCCCGCCTGGC | |||||||||||||
altered gDNA sequence snippet | GGCCGGGTCTGGCCCCCGAGACCCTGTCGGCCCCGCCTGGC | |||||||||||||
original cDNA sequence snippet | N/A | |||||||||||||
altered cDNA sequence snippet | N/A | |||||||||||||
wildtype AA sequence | MNGICRVRAR GGERRKEGCG GGGGGGGGGG SGGSGGGGGG GGGGDKSPPG SAASKRARTA YTSAQLVELE KEFHFNRYLC RPRRVEMANL LNLSERQIKI WFQNRRMKYK KDQKAKGLAS SSGGPSPAGS PPQPMQSTAG FMNALHSMTP SYESPSPPAF GKAHQNAYAL PSNYQPPLKG CGAPQKYPPT PAPEYEPHVL QANGGAYGTP TMQGSPVYVG GGGYADPLPP PAGPSLYGLN HLSHHPSGNL DYNGAPPMAP SQHHGPCEPH PTYTDLSSHH APPPQGRIQE APKLTHL* | |||||||||||||
mutated AA sequence | N/A | |||||||||||||
speed | 0.75 s | |||||||||||||