mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 0.999999911708354 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
Summary |
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hyperlink | ||||||||||||
analysed issue | analysis result | |||||||||||||
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name of alteration | no title | |||||||||||||
alteration (phys. location) | chr19:54726324G>CN/A show variant in all transcripts IGV | |||||||||||||
HGNC symbol | LILRA6 | |||||||||||||
Ensembl transcript ID | ENST00000391735 | |||||||||||||
Genbank transcript ID | N/A | |||||||||||||
UniProt peptide | Q6PI73 | |||||||||||||
alteration type | single base exchange | |||||||||||||
alteration region | intron | |||||||||||||
DNA changes | g.20807C>G | |||||||||||||
AA changes | N/A | |||||||||||||
position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
frameshift | N/A | |||||||||||||
known variant | Reference ID: rs79304773
Allele 'C' was neither found in ExAC nor 1000G. | |||||||||||||
regulatory features | H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation | |||||||||||||
phyloP / phastCons |
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splice sites | splice site change occurs after stopcodon (at aa 408)
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distance from splice site | 3210 | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
conservation protein level for non-synonymous changes | N/A | |||||||||||||
protein features | N/A | |||||||||||||
length of protein | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
position of stopcodon in wt / mu CDS | N/A | |||||||||||||
position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
position of start ATG in wt / mu cDNA | 3 / 3 | |||||||||||||
chromosome | 19 | |||||||||||||
strand | -1 | |||||||||||||
last intron/exon boundary | 1613 | |||||||||||||
theoretical NMD boundary in CDS | 1560 | |||||||||||||
length of CDS | 582 | |||||||||||||
coding sequence (CDS) position | N/A | |||||||||||||
cDNA position (for ins/del: last normal base / first normal base) | N/A | |||||||||||||
gDNA position (for ins/del: last normal base / first normal base) | 20807 | |||||||||||||
chromosomal position (for ins/del: last normal base / first normal base) | 54726324 | |||||||||||||
original gDNA sequence snippet | AGGCCCAGGAGTACCGACTGCATAAAGAGGGAAGCCCAGAG | |||||||||||||
altered gDNA sequence snippet | AGGCCCAGGAGTACCGACTGGATAAAGAGGGAAGCCCAGAG | |||||||||||||
original cDNA sequence snippet | N/A | |||||||||||||
altered cDNA sequence snippet | N/A | |||||||||||||
wildtype AA sequence | MTPALTALLC LGLSLGPRTR VQAGPFPKPT LWAEPGSVIS WGSPVTIWCQ GSLEAQEYQL DKEGSPEPLD RNNPLEPKNK ARFSIPSMTQ HHAGRYRCHY YSSAGWSEPS DPLELVMTGF YNKPTLSALP SPVVASGGNM TLRCGSQKGY HHFVLMKEGE HQLPRTLDSQ QLHSGGFQAL FPVGPVTPSH RRV* | |||||||||||||
mutated AA sequence | N/A | |||||||||||||
speed | 0.90 s | |||||||||||||