by calling webinterface for chromosomal positionsIf you want to integrate single queries of our web interface for chromosomal positions in your personal NGS pipelines, this is possible via the following command:
CALL: 'http://www.mutationtaster.org/cgi-bin/MutationTaster/MT_ChrPos.cgi?chromosome=3&position=190122694&ref=G&alt=A'The URL has to be in quotation marks. The respective values for chromosome, position, ref and alt have to be set according to the variant(s) in question.
by running a Perl script which automatically calls the MutationTaster QueryEngineIf you want to avoid the manual upload of vcf files to our QueryEngine, we can provide, on request, a Perl script which automatically sends a VCF file to the QueryEngine and afterwards retrieves the results. If you are interested in this script, please write us an E-Mail.