Yum, tasty mutations...

MutationTaster - study a chromosomal position

 MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 4 transcript(s)...
Querying Taster for transcript #1: ENST00000281182
Querying Taster for transcript #2: ENST00000374752
Querying Taster for transcript #3: ENST00000543332
Querying Taster for transcript #4: ENST00000537423
MT speed 0 s - this script 4.353977 s

Results

genesymbolpredictionprobabilitymodelprediction
problem		splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
ACAD8disease_causing_automatic0.999970818163872simple_aaeaffected0H289Qsingle base exchangers121908421show file
ACAD8disease_causing_automatic0.999970818163872simple_aaeaffected0H212Qsingle base exchangers121908421show file
ACAD8disease_causing_automatic0.999981903932594simple_aaeaffected0H162Qsingle base exchangers121908421show file
ACAD8disease_causing_automatic0.99999600441691simple_aaeaffected0H191Qsingle base exchangers121908421show file

Taster files

Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999970818163872 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM070641)
  • known disease mutation: rs5358 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr11:134131194C>AN/A show variant in all transcripts   IGV
HGNC symbol ACAD8
Ensembl transcript ID ENST00000281182
Genbank transcript ID NM_014384
UniProt peptide Q9UKU7
alteration type single base exchange
alteration region CDS
DNA changes c.867C>A
cDNA.973C>A
g.7806C>A
AA changes H289Q Score: 24 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 289
frameshift no
known variant Reference ID: rs121908421
Allele 'A' was neither found in ExAC nor 1000G.
known disease mutation: rs5358 (pathogenic for Deficiency of isobutyryl-CoA dehydrogenase) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)

known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.6231
0.0930.996
(flanking)5.5831
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased7801wt: 0.36 / mu: 0.75wt: GGGCTGCCCACGCCT
mu: GGGCTGCCCAAGCCT		 GCTG|ccca
distance from splice site 26
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      289INIASCSLGAAHASVILTRDHLNV
mutated  not conserved    289INIASCSLGAAQASVILTRDHLN
Ptroglodytes  all identical  ENSPTRG00000004496  289INIASCSLGAAHASVILTRDHLN
Mmulatta  all identical  ENSMMUG00000007107  289INIASCSLGAAHASVILTRDHLK
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000031969  287INVASCSLGAAHASVILTQEHLK
Ggallus  all identical  ENSGALG00000001557  286INIASCSLGAAHASVLLAQEHLT
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000042658  291INIASCSLGAAHASVLLARDHMC
Dmelanogaster  no homologue    
Celegans  not conserved  F28A10.6  277INIASCSLGAAQRSMDLAIEHLK
Xtropicalis  all identical  ENSXETG00000008327  288INIAKASCSLGAAHASVLLARDHLG
protein features
start (aa)end (aa)featuredetails 
265301HELIXlost
302302BINDINGFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
309311HELIXmight get lost (downstream of altered splice site)
312313NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
313341HELIXmight get lost (downstream of altered splice site)
347372HELIXmight get lost (downstream of altered splice site)
371375NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
373378HELIXmight get lost (downstream of altered splice site)
384393HELIXmight get lost (downstream of altered splice site)
394396TURNmight get lost (downstream of altered splice site)
397399STRANDmight get lost (downstream of altered splice site)
398398ACT_SITEProton acceptor.might get lost (downstream of altered splice site)
399399BINDINGSubstrate; via amide nitrogen.might get lost (downstream of altered splice site)
400402NP_BINDFAD.might get lost (downstream of altered splice site)
401414HELIXmight get lost (downstream of altered splice site)
410410BINDINGSubstrate.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1248 / 1248
position (AA) of stopcodon in wt / mu AA sequence 416 / 416
position of stopcodon in wt / mu cDNA 1354 / 1354
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 107 / 107
chromosome 11
strand 1
last intron/exon boundary 1302
theoretical NMD boundary in CDS 1145
length of CDS 1248
coding sequence (CDS) position 867
cDNA position
(for ins/del: last normal base / first normal base)		 973
gDNA position
(for ins/del: last normal base / first normal base)		 7806
chromosomal position
(for ins/del: last normal base / first normal base)		 134131194
original gDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered gDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
original cDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered cDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
wildtype AA sequence MLWSGCRRFG ARLGCLPGGL RVLVQTGHRS LTSCIDPSMG LNEEQKEFQK VAFDFAAREM
APNMAEWDQK ELFPVDVMRK AAQLGFGGVY IQTDVGGSGL SRLDTSVIFE ALATGCTSTT
AYISIHNMCA WMIDSFGNEE QRHKFCPPLC TMEKFASYCL TEPGSGSDAA SLLTSAKKQG
DHYILNGSKA FISGAGESDI YVVMCRTGGP GPKGISCIVV EKGTPGLSFG KKEKKVGWNS
QPTRAVIFED CAVPVANRIG SEGQGFLIAV RGLNGGRINI ASCSLGAAHA SVILTRDHLN
VRKQFGEPLA SNQYLQFTLA DMATRLVAAR LMVRNAAVAL QEERKDAVAL CSMAKLFATD
ECFAICNQAL QMHGGYGYLK DYAVQQYVRD SRVHQILEGS NEVMRILISR SLLQE*
mutated AA sequence MLWSGCRRFG ARLGCLPGGL RVLVQTGHRS LTSCIDPSMG LNEEQKEFQK VAFDFAAREM
APNMAEWDQK ELFPVDVMRK AAQLGFGGVY IQTDVGGSGL SRLDTSVIFE ALATGCTSTT
AYISIHNMCA WMIDSFGNEE QRHKFCPPLC TMEKFASYCL TEPGSGSDAA SLLTSAKKQG
DHYILNGSKA FISGAGESDI YVVMCRTGGP GPKGISCIVV EKGTPGLSFG KKEKKVGWNS
QPTRAVIFED CAVPVANRIG SEGQGFLIAV RGLNGGRINI ASCSLGAAQA SVILTRDHLN
VRKQFGEPLA SNQYLQFTLA DMATRLVAAR LMVRNAAVAL QEERKDAVAL CSMAKLFATD
ECFAICNQAL QMHGGYGYLK DYAVQQYVRD SRVHQILEGS NEVMRILISR SLLQE*
speed 0.78 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999970818163872 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM070641)
  • known disease mutation: rs5358 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr11:134131194C>AN/A show variant in all transcripts   IGV
HGNC symbol ACAD8
Ensembl transcript ID ENST00000537423
Genbank transcript ID N/A
UniProt peptide Q9UKU7
alteration type single base exchange
alteration region CDS
DNA changes c.636C>A
cDNA.819C>A
g.7806C>A
AA changes H212Q Score: 24 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 212
frameshift no
known variant Reference ID: rs121908421
Allele 'A' was neither found in ExAC nor 1000G.
known disease mutation: rs5358 (pathogenic for Deficiency of isobutyryl-CoA dehydrogenase) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)

known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.6231
0.0930.996
(flanking)5.5831
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased7801wt: 0.36 / mu: 0.75wt: GGGCTGCCCACGCCT
mu: GGGCTGCCCAAGCCT		 GCTG|ccca
distance from splice site 26
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      212INIASCSLGAAHASVILTRDHLNV
mutated  not conserved    212INIASCSLGAAQASVILTRDHLN
Ptroglodytes  all identical  ENSPTRG00000004496  289INIASCSLGAAHASVILTRDHLN
Mmulatta  all identical  ENSMMUG00000007107  289INIASCSLGAAHASVILTRDHLK
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000031969  287INVASCSLGAAHASVILTQEHLK
Ggallus  all identical  ENSGALG00000001557  286INIASCSLGAAHASVLLAQEHLT
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000042658  291INIASCSLGAAHASVLLARDHMC
Dmelanogaster  no homologue    
Celegans  not conserved  F28A10.6  277INIASCSLGAAQRSMDLAIEHLK
Xtropicalis  all identical  ENSXETG00000008327  288INIAKASCSLGAAHASVLLARDHLG
protein features
start (aa)end (aa)featuredetails 
199211STRANDmight get lost (downstream of altered splice site)
210210CONFLICTP -> L (in Ref. 4; AAH01964).might get lost (downstream of altered splice site)
212214HELIXlost
215221STRANDmight get lost (downstream of altered splice site)
227229STRANDmight get lost (downstream of altered splice site)
235237STRANDmight get lost (downstream of altered splice site)
243254STRANDmight get lost (downstream of altered splice site)
255257HELIXmight get lost (downstream of altered splice site)
258261STRANDmight get lost (downstream of altered splice site)
265301HELIXmight get lost (downstream of altered splice site)
274277REGIONSubstrate binding.might get lost (downstream of altered splice site)
302302BINDINGFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
309311HELIXmight get lost (downstream of altered splice site)
312313NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
313341HELIXmight get lost (downstream of altered splice site)
347372HELIXmight get lost (downstream of altered splice site)
371375NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
373378HELIXmight get lost (downstream of altered splice site)
384393HELIXmight get lost (downstream of altered splice site)
394396TURNmight get lost (downstream of altered splice site)
397399STRANDmight get lost (downstream of altered splice site)
398398ACT_SITEProton acceptor.might get lost (downstream of altered splice site)
399399BINDINGSubstrate; via amide nitrogen.might get lost (downstream of altered splice site)
400402NP_BINDFAD.might get lost (downstream of altered splice site)
401414HELIXmight get lost (downstream of altered splice site)
410410BINDINGSubstrate.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1074 / 1074
position (AA) of stopcodon in wt / mu AA sequence 358 / 358
position of stopcodon in wt / mu cDNA 1257 / 1257
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 184 / 184
chromosome 11
strand 1
last intron/exon boundary 1148
theoretical NMD boundary in CDS 914
length of CDS 1074
coding sequence (CDS) position 636
cDNA position
(for ins/del: last normal base / first normal base)		 819
gDNA position
(for ins/del: last normal base / first normal base)		 7806
chromosomal position
(for ins/del: last normal base / first normal base)		 134131194
original gDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered gDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
original cDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered cDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
wildtype AA sequence MRKAAQLGFG GVYIQTDVGG SGLSRLDTSV IFEALATGCT STTAYISIHN MCAWMIDSFG
NEEQRHKFCP PLCTMEKFAS YCLTEPGSGS DAASLLTSAK KQGDHYILNG SKAFISGAGE
SDIYVVMCRT GGPGPKGISC IVVEKGTPGL SFGKKEKKVG WNSQPTRAVI FEDCAVPVAN
RIGSEGQGFL IAVRGLNGGR INIASCSLGA AHASVILTRD HLNVRKQFGE PLASNQYLQF
TLADMATRLV AARLMVRNAA VALQEERKDA VALCSMAKLF ATDECFAICN QALQMHGGYG
YLKDYAVQQY VRDSRVHQIL EELFWQGPGV QSRSFVPFGG PQIALLLPFS SGDLREG*
mutated AA sequence MRKAAQLGFG GVYIQTDVGG SGLSRLDTSV IFEALATGCT STTAYISIHN MCAWMIDSFG
NEEQRHKFCP PLCTMEKFAS YCLTEPGSGS DAASLLTSAK KQGDHYILNG SKAFISGAGE
SDIYVVMCRT GGPGPKGISC IVVEKGTPGL SFGKKEKKVG WNSQPTRAVI FEDCAVPVAN
RIGSEGQGFL IAVRGLNGGR INIASCSLGA AQASVILTRD HLNVRKQFGE PLASNQYLQF
TLADMATRLV AARLMVRNAA VALQEERKDA VALCSMAKLF ATDECFAICN QALQMHGGYG
YLKDYAVQQY VRDSRVHQIL EELFWQGPGV QSRSFVPFGG PQIALLLPFS SGDLREG*
speed 0.73 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999981903932594 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM070641)
  • known disease mutation: rs5358 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr11:134131194C>AN/A show variant in all transcripts   IGV
HGNC symbol ACAD8
Ensembl transcript ID ENST00000374752
Genbank transcript ID N/A
UniProt peptide Q9UKU7
alteration type single base exchange
alteration region CDS
DNA changes c.486C>A
cDNA.526C>A
g.7806C>A
AA changes H162Q Score: 24 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 162
frameshift no
known variant Reference ID: rs121908421
Allele 'A' was neither found in ExAC nor 1000G.
known disease mutation: rs5358 (pathogenic for Deficiency of isobutyryl-CoA dehydrogenase) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)

known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.6231
0.0930.996
(flanking)5.5831
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased7801wt: 0.36 / mu: 0.75wt: GGGCTGCCCACGCCT
mu: GGGCTGCCCAAGCCT		 GCTG|ccca
distance from splice site 26
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      162INIASCSLGAAHASVILTRDHLNV
mutated  not conserved    162INIASCSLGAAQASVILTRDHLN
Ptroglodytes  all identical  ENSPTRG00000004496  289LGAAHASVILTRDHLN
Mmulatta  all identical  ENSMMUG00000007107  289GAAHASVILTRDHLK
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000031969  287LGAAHASVILTQEHLK
Ggallus  all identical  ENSGALG00000001557  286LGAAHASVLLAQEHLT
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000042658  291LGAAHASVLLARDHMC
Dmelanogaster  no homologue    
Celegans  not conserved  F28A10.6  277CSLGAAQRSMDLAIEHLK
Xtropicalis  all identical  ENSXETG00000008327  290CSLGAAHASVLLARDHLG
protein features
start (aa)end (aa)featuredetails 
158167NP_BINDFAD.lost
165168STRANDmight get lost (downstream of altered splice site)
167167BINDINGSubstrate; via carbonyl oxygen.might get lost (downstream of altered splice site)
169171HELIXmight get lost (downstream of altered splice site)
175179STRANDmight get lost (downstream of altered splice site)
182193STRANDmight get lost (downstream of altered splice site)
191193NP_BINDFAD.might get lost (downstream of altered splice site)
194197TURNmight get lost (downstream of altered splice site)
199211STRANDmight get lost (downstream of altered splice site)
210210CONFLICTP -> L (in Ref. 4; AAH01964).might get lost (downstream of altered splice site)
212214HELIXmight get lost (downstream of altered splice site)
215221STRANDmight get lost (downstream of altered splice site)
227229STRANDmight get lost (downstream of altered splice site)
235237STRANDmight get lost (downstream of altered splice site)
243254STRANDmight get lost (downstream of altered splice site)
255257HELIXmight get lost (downstream of altered splice site)
258261STRANDmight get lost (downstream of altered splice site)
265301HELIXmight get lost (downstream of altered splice site)
274277REGIONSubstrate binding.might get lost (downstream of altered splice site)
302302BINDINGFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
309311HELIXmight get lost (downstream of altered splice site)
312313NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
313341HELIXmight get lost (downstream of altered splice site)
347372HELIXmight get lost (downstream of altered splice site)
371375NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
373378HELIXmight get lost (downstream of altered splice site)
384393HELIXmight get lost (downstream of altered splice site)
394396TURNmight get lost (downstream of altered splice site)
397399STRANDmight get lost (downstream of altered splice site)
398398ACT_SITEProton acceptor.might get lost (downstream of altered splice site)
399399BINDINGSubstrate; via amide nitrogen.might get lost (downstream of altered splice site)
400402NP_BINDFAD.might get lost (downstream of altered splice site)
401414HELIXmight get lost (downstream of altered splice site)
410410BINDINGSubstrate.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 867 / 867
position (AA) of stopcodon in wt / mu AA sequence 289 / 289
position of stopcodon in wt / mu cDNA 907 / 907
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 41 / 41
chromosome 11
strand 1
last intron/exon boundary 855
theoretical NMD boundary in CDS 764
length of CDS 867
coding sequence (CDS) position 486
cDNA position
(for ins/del: last normal base / first normal base)		 526
gDNA position
(for ins/del: last normal base / first normal base)		 7806
chromosomal position
(for ins/del: last normal base / first normal base)		 134131194
original gDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered gDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
original cDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered cDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
wildtype AA sequence MLWSGCRRFG ARLGCLPGGL RVLVQTGHRS LTSCIDRSGS DAASLLTSAK KQGDHYILNG
SKAFISGAGE SDIYVVMCRT GGPGPKGISC IVVEKGTPGL SFGKKEKKVG WNSQPTRAVI
FEDCAVPVAN RIGSEGQGFL IAVRGLNGGR INIASCSLGA AHASVILTRD HLNVRKQFGE
PLASNQYLQF TLADMATRLV AARLMVRNAA VALQEERKDA VALCSMAKLF ATDECFAICN
QALQMHGGYG YLKDYAVQQY VRDSRVHQIL EGSNEVMRIL ISRSLLQE*
mutated AA sequence MLWSGCRRFG ARLGCLPGGL RVLVQTGHRS LTSCIDRSGS DAASLLTSAK KQGDHYILNG
SKAFISGAGE SDIYVVMCRT GGPGPKGISC IVVEKGTPGL SFGKKEKKVG WNSQPTRAVI
FEDCAVPVAN RIGSEGQGFL IAVRGLNGGR INIASCSLGA AQASVILTRD HLNVRKQFGE
PLASNQYLQF TLADMATRLV AARLMVRNAA VALQEERKDA VALCSMAKLF ATDECFAICN
QALQMHGGYG YLKDYAVQQY VRDSRVHQIL EGSNEVMRIL ISRSLLQE*
speed 0.83 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.99999600441691 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM070641)
  • known disease mutation: rs5358 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr11:134131194C>AN/A show variant in all transcripts   IGV
HGNC symbol ACAD8
Ensembl transcript ID ENST00000543332
Genbank transcript ID N/A
UniProt peptide Q9UKU7
alteration type single base exchange
alteration region CDS
DNA changes c.573C>A
cDNA.740C>A
g.7806C>A
AA changes H191Q Score: 24 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 191
frameshift no
known variant Reference ID: rs121908421
Allele 'A' was neither found in ExAC nor 1000G.
known disease mutation: rs5358 (pathogenic for Deficiency of isobutyryl-CoA dehydrogenase) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)

known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
known disease mutation at this position, please check HGMD for details (HGMD ID CM070641)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.6231
0.0930.996
(flanking)5.5831
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased7801wt: 0.36 / mu: 0.75wt: GGGCTGCCCACGCCT
mu: GGGCTGCCCAAGCCT		 GCTG|ccca
distance from splice site 26
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      191INIASCSLGAAHASVILTRDHLNV
mutated  not conserved    191NIASCSLGAAQASVILTRDHLN
Ptroglodytes  all identical  ENSPTRG00000004496  289INIASCSLGAAHASVILTRDHLN
Mmulatta  all identical  ENSMMUG00000007107  289INIASCSLGAAHASVILTRDHLK
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000031969  287INVASCSLGAAHASVILTQEHLK
Ggallus  all identical  ENSGALG00000001557  286INIASCSLGAAHASVLLAQEHLT
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000042658  291INIASCSLGAAHASVLLARDHMC
Dmelanogaster  no homologue    
Celegans  not conserved  F28A10.6  277INIASCSLGAAQRSMDLAIEHLK
Xtropicalis  all identical  ENSXETG00000008327  288INIAKASCSLGAAHASVLLARDHLG
protein features
start (aa)end (aa)featuredetails 
182193STRANDlost
191193NP_BINDFAD.lost
194197TURNmight get lost (downstream of altered splice site)
199211STRANDmight get lost (downstream of altered splice site)
210210CONFLICTP -> L (in Ref. 4; AAH01964).might get lost (downstream of altered splice site)
212214HELIXmight get lost (downstream of altered splice site)
215221STRANDmight get lost (downstream of altered splice site)
227229STRANDmight get lost (downstream of altered splice site)
235237STRANDmight get lost (downstream of altered splice site)
243254STRANDmight get lost (downstream of altered splice site)
255257HELIXmight get lost (downstream of altered splice site)
258261STRANDmight get lost (downstream of altered splice site)
265301HELIXmight get lost (downstream of altered splice site)
274277REGIONSubstrate binding.might get lost (downstream of altered splice site)
302302BINDINGFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
309311HELIXmight get lost (downstream of altered splice site)
312313NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
313341HELIXmight get lost (downstream of altered splice site)
347372HELIXmight get lost (downstream of altered splice site)
371375NP_BINDFAD; shared with dimeric partner.might get lost (downstream of altered splice site)
373378HELIXmight get lost (downstream of altered splice site)
384393HELIXmight get lost (downstream of altered splice site)
394396TURNmight get lost (downstream of altered splice site)
397399STRANDmight get lost (downstream of altered splice site)
398398ACT_SITEProton acceptor.might get lost (downstream of altered splice site)
399399BINDINGSubstrate; via amide nitrogen.might get lost (downstream of altered splice site)
400402NP_BINDFAD.might get lost (downstream of altered splice site)
401414HELIXmight get lost (downstream of altered splice site)
410410BINDINGSubstrate.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 681 / 681
position (AA) of stopcodon in wt / mu AA sequence 227 / 227
position of stopcodon in wt / mu cDNA 848 / 848
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 168 / 168
chromosome 11
strand 1
last intron/exon boundary 1097
theoretical NMD boundary in CDS 879
length of CDS 681
coding sequence (CDS) position 573
cDNA position
(for ins/del: last normal base / first normal base)		 740
gDNA position
(for ins/del: last normal base / first normal base)		 7806
chromosomal position
(for ins/del: last normal base / first normal base)		 134131194
original gDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered gDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
original cDNA sequence snippet TGCTCCCTGGGGGCTGCCCACGCCTCTGTCATCCTCACCCG
altered cDNA sequence snippet TGCTCCCTGGGGGCTGCCCAAGCCTCTGTCATCCTCACCCG
wildtype AA sequence MKSRKNFKKW PLTLLPERWL QIWQSGTRSM CAWMIDSFGN EEQRHKFCPP LCTMEKFASY
CLTEPGSGSD AASLLTSAKK QGDHYILNGS KAFISGAGES DIYVVMCRTG GPGPKGISCI
VVEKGTPGLS FGKKEKKVGW NSQPTRAVIF EDCAVPVANR IGSEGQGFLI AVRGLNGGRI
NIASCSLGAA HASVILTRDH LNVRKQFGEP LASNQKKQET LKLWIT*
mutated AA sequence MKSRKNFKKW PLTLLPERWL QIWQSGTRSM CAWMIDSFGN EEQRHKFCPP LCTMEKFASY
CLTEPGSGSD AASLLTSAKK QGDHYILNGS KAFISGAGES DIYVVMCRTG GPGPKGISCI
VVEKGTPGLS FGKKEKKVGW NSQPTRAVIF EDCAVPVANR IGSEGQGFLI AVRGLNGGRI
NIASCSLGAA QASVILTRDH LNVRKQFGEP LASNQKKQET LKLWIT*
speed 0.71 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems