Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 3 transcript(s)...
Querying Taster for transcript #1: ENST00000543111
Querying Taster for transcript #2: ENST00000327337
Querying Taster for transcript #3: ENST00000543096
MT speed 1.71 s - this script 4.106089 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
FAM186Apolymorphism_automatic6.21574625603305e-06simple_aaeH177Ysingle base exchangers7296291show file
FAM186Apolymorphism_automatic6.21574625603305e-06simple_aaeH2166Ysingle base exchangers7296291show file
FAM186Apolymorphism_automatic6.21574625603305e-06simple_aaeH2166Ysingle base exchangers7296291show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999993784253744 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:50744119G>AN/A show variant in all transcripts   IGV
HGNC symbol FAM186A
Ensembl transcript ID ENST00000543096
Genbank transcript ID N/A
UniProt peptide A6NE01
alteration type single base exchange
alteration region CDS
DNA changes c.529C>T
cDNA.550C>T
g.46287C>T
AA changes H177Y Score: 83 explain score(s)
position(s) of altered AA
if AA alteration in CDS
177
frameshift no
known variant Reference ID: rs7296291
databasehomozygous (A/A)heterozygousallele carriers
1000G95911132072
ExAC364144558096
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.0720.702
-0.6520.674
(flanking)0.4540.81
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased46289wt: 0.9319 / mu: 0.9511 (marginal change - not scored)wt: CAGCATGCCAGGTAG
mu: CAGTATGCCAGGTAG
 GCAT|gcca
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      177FRKYIAYRLIQHARNNIMKRLKAI
mutated  all conserved    177FRKYIAYRLIQYARN
Ptroglodytes  no homologue    
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000045350  2853SRKYVAYRLIQLARNHLTKR
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1080 / 1080
position (AA) of stopcodon in wt / mu AA sequence 360 / 360
position of stopcodon in wt / mu cDNA 1101 / 1101
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 22 / 22
chromosome 12
strand -1
last intron/exon boundary 1089
theoretical NMD boundary in CDS 1017
length of CDS 1080
coding sequence (CDS) position 529
cDNA position
(for ins/del: last normal base / first normal base)
550
gDNA position
(for ins/del: last normal base / first normal base)
46287
chromosomal position
(for ins/del: last normal base / first normal base)
50744119
original gDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGTAGATATAATTA
altered gDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGTAGATATAATTA
original cDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGAACAACATAATG
altered cDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGAACAACATAATG
wildtype AA sequence MSEVSDTSEE TQILRDTFAI ESFRTFQSHF TKYRTPVYQT PYTDERALLT LMKPTTSPSS
LTTLLRTSQI SPLEWYQKSR FPPIDKPWIL SSVSDTKKPK VMVPPSSPQE LEEKRYFVDV
EAQKKNLILL NQAIKTCGLP SQLHTMARTL IIEILHMDTV QLGYLFRKYI AYRLIQHARN
NIMKRLKAIQ NTGKGYEARN LHMMLSRLDD YGKKVMQVWT EKQKSLGQKR NQCLKKMIHV
FNQLKKIHEL NLSQPIPLII EEKQIPASTT FVQKPFLKLL MEEDRTSDIC KKFRQQEDQT
EAIWNVDLST SSYPIAEKTS MHSLWAQLGG YPDIPRLLQL EVQSTFRKSL ASLQSRSSG*
mutated AA sequence MSEVSDTSEE TQILRDTFAI ESFRTFQSHF TKYRTPVYQT PYTDERALLT LMKPTTSPSS
LTTLLRTSQI SPLEWYQKSR FPPIDKPWIL SSVSDTKKPK VMVPPSSPQE LEEKRYFVDV
EAQKKNLILL NQAIKTCGLP SQLHTMARTL IIEILHMDTV QLGYLFRKYI AYRLIQYARN
NIMKRLKAIQ NTGKGYEARN LHMMLSRLDD YGKKVMQVWT EKQKSLGQKR NQCLKKMIHV
FNQLKKIHEL NLSQPIPLII EEKQIPASTT FVQKPFLKLL MEEDRTSDIC KKFRQQEDQT
EAIWNVDLST SSYPIAEKTS MHSLWAQLGG YPDIPRLLQL EVQSTFRKSL ASLQSRSSG*
speed 0.87 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999993784253744 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:50744119G>AN/A show variant in all transcripts   IGV
HGNC symbol FAM186A
Ensembl transcript ID ENST00000543111
Genbank transcript ID N/A
UniProt peptide A6NE01
alteration type single base exchange
alteration region CDS
DNA changes c.6496C>T
cDNA.6634C>T
g.46287C>T
AA changes H2166Y Score: 83 explain score(s)
position(s) of altered AA
if AA alteration in CDS
2166
frameshift no
known variant Reference ID: rs7296291
databasehomozygous (A/A)heterozygousallele carriers
1000G95911132072
ExAC364144558096
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.0720.702
-0.6520.674
(flanking)0.4540.81
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased46289wt: 0.9319 / mu: 0.9511 (marginal change - not scored)wt: CAGCATGCCAGGTAG
mu: CAGTATGCCAGGTAG
 GCAT|gcca
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      2166FRKYIAYRLIQHARNNIMKRLKAI
mutated  all conserved    2166YRLIQYARNNIMKRLKA
Ptroglodytes  no homologue    
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000045350  2853SRKYVAYRLIQLARNHLTKRVKT
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 7047 / 7047
position (AA) of stopcodon in wt / mu AA sequence 2349 / 2349
position of stopcodon in wt / mu cDNA 7185 / 7185
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 139 / 139
chromosome 12
strand -1
last intron/exon boundary 7173
theoretical NMD boundary in CDS 6984
length of CDS 7047
coding sequence (CDS) position 6496
cDNA position
(for ins/del: last normal base / first normal base)
6634
gDNA position
(for ins/del: last normal base / first normal base)
46287
chromosomal position
(for ins/del: last normal base / first normal base)
50744119
original gDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGTAGATATAATTA
altered gDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGTAGATATAATTA
original cDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGAACAACATAATG
altered cDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGAACAACATAATG
wildtype AA sequence MFFKMKNEID NDPESEKCIK DSTIMRREPQ NILSPLMLPN LEIPFSVKDI ISRIERAQLH
RAREDIDMQL SEIMNNVHRI MTRYTLVFNS SSERNVSLTE HKKKQRTNFL EKMATYAKTI
EIREKTLANI LAWLEEWNDV LSEMTLMDVD EHHHWIAQME LLPDTLKAIE NNVKILSRFS
TSFLDEKKKQ KKKILSRGTL WKSWKERVIK RPSTARALRP DQMISDQLAT NTKVSEIQGM
LQELIGTTMF STLENNAIKY ISSTIVNLST ALSMLNDELK CVNFQSSTVY AHETSEAEKE
LSLKIIRDLS NENEMLQQKL QDAEEKCEQL IRSKIVIEQL YAKLSTSSTL KVLPGPSPQS
SRAIIKVGDT EDNMDNILDK ELENIVDEVQ RKETKDSGIK WDSTISYTAQ AERTPDLTEL
RQQPVASEDI SEDSTKDNVS LKKGDFYQED ETDEYQSWKR SHKKATYVYE TSGPNLSDNK
SGQKVSEAKP SQYYELQVLK KKRKEMKSFS EDKSKSPTEA KRKHLSLTET KSQGGKSGTS
MMMLEQFRKV KRESPFDKRP TAAEIKVEPT TESLDKEGKG EIRSLVEPLS MIQFDDTAEP
QKGKIKGKKH HISSGTITSK EEKTEEKEEL TKQVKSHQLV KSLSRVAKET SESTRVLESP
DGKSEQSNLE EFQEAIMAFL KQKIDNIGKA FDKKTVPKEE ELLKRAEAEK LGIIKAKMEE
YFQKVAETVT KILRKYKDTK KEEQVGEKPI KQKKVVSFMP GLHFQKSPIS AKSESSTLLS
YESTDPVINN LIQMILAEIE SERDIPTVST VQKDHKEKEK QRQEQYLQEG QEQMSGMSLK
QQLLGERNLL KEHYEKISEN WEEKKAWLQM KEGKQEQQSQ KQWQEEEMWK EEQKQATPKQ
AEQEEKQKQR GQEEEELPKS SLQRLEEGTQ KMKTQGLLLE KENGQMRQIQ KEAKHLGPHR
RREKGKEKQK PERGLEDLER QIKTKDQMQM KETQPKELEK MVIQTPMTLS PRWKSVLKDV
QRSYEGKEFQ RNLKTLENLP DEKEPISITP PPSLQYSLPG ALPISGQPLT KCIHLTPQQA
QEVGITLTPQ QAQAQGITLT LQQAQELGIP LTPQQAQALE ILFTPQQAQA LGIPLTPQQT
QVQGITLTPQ QDQAPGISLT TQQAQKLGIP LTPQQAQALG IPLTPQQAQE LGIPLTPQQA
QALRVSLTPQ QAQELGIPLT PQQAQALGIT LTLQQAQQLG IPLTPQQAQA LGITLTPKQV
QELGIPLTPQ QAQALGITLT PKQAQELGIP LNPQQAQTLG IPLTPKQAQA LGIPFTPQQA
QALGIPLTPQ QAQTQEITLT PQQAQALGMP LTTQQAQELG IPLTPQHAQA LGMPLTTQQA
QELGIPLTPQ QAQALGMPLT TQQAQELGIP LTPQQAQELG IPFTPQQAQA QEITLTPQQA
QALGMPLTAQ QAQELGITLT PQQAQELGIP LTPQQAQALG IPLIPPQAQE LGIPLTPQQA
QALGILLIPP QAQELGIPLT PQQAQALGIP LIPPQAQELG IPLTPQQVQA LGIPLIPPQA
QELEIPLTPQ QAQALGIPLT PQQAQELGIP LTPQQAQELG IPLTPQQAQA QGIPLTPQQA
QALGISLTPQ QAQAQGITLT PQQAQALGVP ITPVNAWVSA VTLTSEQTHA LESPMNLEQA
QEQLLKLGVP LTLDKAHTLG SPLTLKQVQW SHRPFQKSKA SLPTGQSIIS RLSPSLRLSL
ASSAPTAEKS SIFGVSSTPL QISRVPLNQG PFAPGKPLEM GILSEPGKLG APQTLRSSGQ
TLVYGGQSTS AQFPAPQAPP SPGQLPISRA PPTPGQPFIA GVPPTSGQIP SLWAPLSPGQ
PLVPEASSIP GDLLESGPLT FSEQLQEFQP PATAEQSPYL QAPSTPGQHL ATWTLPGRAS
SLWIPPTSRH PPTLWPSPAP GKPQKSWSPS VAKKRLAIIS SLKSKSVLIH PSAPDFKVAQ
VPFTTKKFQM SEVSDTSEET QILRDTFAIE SFRTFQSHFT KYRTPVYQTP YTDERALLTL
MKPTTSPSSL TTLLRTSQIS PLEWYQKSRF PPIDKPWILS SVSDTKKPKV MVPPSSPQEL
EEKRYFVDVE AQKKNLILLN QAIKTCGLPS QLHTMARTLI IEILHMDTVQ LGYLFRKYIA
YRLIQHARNN IMKRLKAIQN TGKGYEARNL HMMLSRLDDY GKKVMQVWTE KQKSLGQKRN
QCLKKMIHVF NQLKKIHELN LSQPIPLIIE EKQIPASTTF VQKPFLKLLM EEDRTSDICK
KFRQQEDQTE AIWNVDLSTS SYPIAEKTSM HSLWAQLGGY PDIPRLLQLE VQSTFRKSLA
SLQSRSSG*
mutated AA sequence MFFKMKNEID NDPESEKCIK DSTIMRREPQ NILSPLMLPN LEIPFSVKDI ISRIERAQLH
RAREDIDMQL SEIMNNVHRI MTRYTLVFNS SSERNVSLTE HKKKQRTNFL EKMATYAKTI
EIREKTLANI LAWLEEWNDV LSEMTLMDVD EHHHWIAQME LLPDTLKAIE NNVKILSRFS
TSFLDEKKKQ KKKILSRGTL WKSWKERVIK RPSTARALRP DQMISDQLAT NTKVSEIQGM
LQELIGTTMF STLENNAIKY ISSTIVNLST ALSMLNDELK CVNFQSSTVY AHETSEAEKE
LSLKIIRDLS NENEMLQQKL QDAEEKCEQL IRSKIVIEQL YAKLSTSSTL KVLPGPSPQS
SRAIIKVGDT EDNMDNILDK ELENIVDEVQ RKETKDSGIK WDSTISYTAQ AERTPDLTEL
RQQPVASEDI SEDSTKDNVS LKKGDFYQED ETDEYQSWKR SHKKATYVYE TSGPNLSDNK
SGQKVSEAKP SQYYELQVLK KKRKEMKSFS EDKSKSPTEA KRKHLSLTET KSQGGKSGTS
MMMLEQFRKV KRESPFDKRP TAAEIKVEPT TESLDKEGKG EIRSLVEPLS MIQFDDTAEP
QKGKIKGKKH HISSGTITSK EEKTEEKEEL TKQVKSHQLV KSLSRVAKET SESTRVLESP
DGKSEQSNLE EFQEAIMAFL KQKIDNIGKA FDKKTVPKEE ELLKRAEAEK LGIIKAKMEE
YFQKVAETVT KILRKYKDTK KEEQVGEKPI KQKKVVSFMP GLHFQKSPIS AKSESSTLLS
YESTDPVINN LIQMILAEIE SERDIPTVST VQKDHKEKEK QRQEQYLQEG QEQMSGMSLK
QQLLGERNLL KEHYEKISEN WEEKKAWLQM KEGKQEQQSQ KQWQEEEMWK EEQKQATPKQ
AEQEEKQKQR GQEEEELPKS SLQRLEEGTQ KMKTQGLLLE KENGQMRQIQ KEAKHLGPHR
RREKGKEKQK PERGLEDLER QIKTKDQMQM KETQPKELEK MVIQTPMTLS PRWKSVLKDV
QRSYEGKEFQ RNLKTLENLP DEKEPISITP PPSLQYSLPG ALPISGQPLT KCIHLTPQQA
QEVGITLTPQ QAQAQGITLT LQQAQELGIP LTPQQAQALE ILFTPQQAQA LGIPLTPQQT
QVQGITLTPQ QDQAPGISLT TQQAQKLGIP LTPQQAQALG IPLTPQQAQE LGIPLTPQQA
QALRVSLTPQ QAQELGIPLT PQQAQALGIT LTLQQAQQLG IPLTPQQAQA LGITLTPKQV
QELGIPLTPQ QAQALGITLT PKQAQELGIP LNPQQAQTLG IPLTPKQAQA LGIPFTPQQA
QALGIPLTPQ QAQTQEITLT PQQAQALGMP LTTQQAQELG IPLTPQHAQA LGMPLTTQQA
QELGIPLTPQ QAQALGMPLT TQQAQELGIP LTPQQAQELG IPFTPQQAQA QEITLTPQQA
QALGMPLTAQ QAQELGITLT PQQAQELGIP LTPQQAQALG IPLIPPQAQE LGIPLTPQQA
QALGILLIPP QAQELGIPLT PQQAQALGIP LIPPQAQELG IPLTPQQVQA LGIPLIPPQA
QELEIPLTPQ QAQALGIPLT PQQAQELGIP LTPQQAQELG IPLTPQQAQA QGIPLTPQQA
QALGISLTPQ QAQAQGITLT PQQAQALGVP ITPVNAWVSA VTLTSEQTHA LESPMNLEQA
QEQLLKLGVP LTLDKAHTLG SPLTLKQVQW SHRPFQKSKA SLPTGQSIIS RLSPSLRLSL
ASSAPTAEKS SIFGVSSTPL QISRVPLNQG PFAPGKPLEM GILSEPGKLG APQTLRSSGQ
TLVYGGQSTS AQFPAPQAPP SPGQLPISRA PPTPGQPFIA GVPPTSGQIP SLWAPLSPGQ
PLVPEASSIP GDLLESGPLT FSEQLQEFQP PATAEQSPYL QAPSTPGQHL ATWTLPGRAS
SLWIPPTSRH PPTLWPSPAP GKPQKSWSPS VAKKRLAIIS SLKSKSVLIH PSAPDFKVAQ
VPFTTKKFQM SEVSDTSEET QILRDTFAIE SFRTFQSHFT KYRTPVYQTP YTDERALLTL
MKPTTSPSSL TTLLRTSQIS PLEWYQKSRF PPIDKPWILS SVSDTKKPKV MVPPSSPQEL
EEKRYFVDVE AQKKNLILLN QAIKTCGLPS QLHTMARTLI IEILHMDTVQ LGYLFRKYIA
YRLIQYARNN IMKRLKAIQN TGKGYEARNL HMMLSRLDDY GKKVMQVWTE KQKSLGQKRN
QCLKKMIHVF NQLKKIHELN LSQPIPLIIE EKQIPASTTF VQKPFLKLLM EEDRTSDICK
KFRQQEDQTE AIWNVDLSTS SYPIAEKTSM HSLWAQLGGY PDIPRLLQLE VQSTFRKSLA
SLQSRSSG*
speed 0.41 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999993784253744 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:50744119G>AN/A show variant in all transcripts   IGV
HGNC symbol FAM186A
Ensembl transcript ID ENST00000327337
Genbank transcript ID NM_001145475
UniProt peptide A6NE01
alteration type single base exchange
alteration region CDS
DNA changes c.6496C>T
cDNA.6496C>T
g.46287C>T
AA changes H2166Y Score: 83 explain score(s)
position(s) of altered AA
if AA alteration in CDS
2166
frameshift no
known variant Reference ID: rs7296291
databasehomozygous (A/A)heterozygousallele carriers
1000G95911132072
ExAC364144558096
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.0720.702
-0.6520.674
(flanking)0.4540.81
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased46289wt: 0.9319 / mu: 0.9511 (marginal change - not scored)wt: CAGCATGCCAGGTAG
mu: CAGTATGCCAGGTAG
 GCAT|gcca
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      2166FRKYIAYRLIQHARNNIMKRLKAI
mutated  all conserved    2166YRLIQYARNNIMKRLKA
Ptroglodytes  no homologue    
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000045350  2853SRKYVAYRLIQLARNHLTKRVKT
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 7056 / 7056
position (AA) of stopcodon in wt / mu AA sequence 2352 / 2352
position of stopcodon in wt / mu cDNA 7056 / 7056
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 1 / 1
chromosome 12
strand -1
last intron/exon boundary 7035
theoretical NMD boundary in CDS 6984
length of CDS 7056
coding sequence (CDS) position 6496
cDNA position
(for ins/del: last normal base / first normal base)
6496
gDNA position
(for ins/del: last normal base / first normal base)
46287
chromosomal position
(for ins/del: last normal base / first normal base)
50744119
original gDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGTAGATATAATTA
altered gDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGTAGATATAATTA
original cDNA sequence snippet TTGCCTATAGGCTGATCCAGCATGCCAGGAACAACATAATG
altered cDNA sequence snippet TTGCCTATAGGCTGATCCAGTATGCCAGGAACAACATAATG
wildtype AA sequence MFFKMKNEID NDPESEKCIK DSTIMRREPQ NILSPLMLPN LEIPFSVKDI ISRIERAQLH
RAREDIDMQL SEIMNNVHRI MTRYTLVFNS SSERNVSLTE HKKKQRTNFL EKMATYAKTI
EIREKTLANI LAWLEEWNDV LSEMTLMDVD EHHHWIAQME LLPDTLKAIE NNVKILSRFS
TSFLDEKKKQ KKKILSRGTL WKSWKERVIK RPSTARALRP DQMISDQLAT NTKVSEIQGM
LQELIGTTMF STLENNAIKY ISSTIVNLST ALSMLNDELK CVNFQSSTVY AHETSEAEKE
LSLKIIRDLS NENEMLQQKL QDAEEKCEQL IRSKIVIEQL YAKLSTSSTL KVLPGPSPQS
SRAIIKVGDT EDNMDNILDK ELENIVDEVQ RKETKDSGIK WDSTISYTAQ AERTPDLTEL
RQQPVASEDI SEDSTKDNVS LKKGDFYQED ETDEYQSWKR SHKKATYVYE TSGPNLSDNK
SGQKVSEAKP SQYYELQVLK KKRKEMKSFS EDKSKSPTEA KRKHLSLTET KSQGGKSGTS
MMMLEQFRKV KRESPFDKRP TAAEIKVEPT TESLDKEGKG EIRSLVEPLS MIQFDDTAEP
QKGKIKGKKH HISSGTITSK EEKTEEKEEL TKQVKSHQLV KSLSRVAKET SESTRVLESP
DGKSEQSNLE EFQEAIMAFL KQKIDNIGKA FDKKTVPKEE ELLKRAEAEK LGIIKAKMEE
YFQKVAETVT KILRKYKDTK KEEQVGEKPI KQKKVVSFMP GLHFQKSPIS AKSESSTLLS
YESTDPVINN LIQMILAEIE SERDIPTVST VQKDHKEKEK QRQEQYLQEG QEQMSGMSLK
QQLLGERNLL KEHYEKISEN WEEKKAWLQM KEGKQEQQSQ KQWQEEEMWK EEQKQATPKQ
AEQEEKQKQR GQEEEELPKS SLQRLEEGTQ KMKTQGLLLE KENGQMRQIQ KEAKHLGPHR
RREKGKEKQK PERGLEDLER QIKTKDQMQM KETQPKELEK MVIQTPMTLS PRWKSVLKDV
QRSYEGKEFQ RNLKTLENLP DEKEPISITP PPSLQYSLPG ALPISGQPLT KCIHLTPQQA
QEVGITLTPQ QAQAQGITLT LQQAQELGIP LTPQQAQALE ILFTPQQAQA LGIPLTPQQT
QVQGITLTPQ QDQAPGISLT TQQAQKLGIP LTPQQAQALG IPLTPQQAQE LGIPLTPQQA
QALRVSLTPQ QAQELGIPLT PQQAQALGIT LTLQQAQQLG IPLTPQQAQA LGITLTPKQV
QELGIPLTPQ QAQALGITLT PKQAQELGIP LNPQQAQTLG IPLTPKQAQA LGIPFTPQQA
QALGIPLTPQ QAQTQEITLT PQQAQALGMP LTTQQAQELG IPLTPQHAQA LGMPLTTQQA
QELGIPLTPQ QAQALGMPLT TQQAQELGIP LTPQQAQELG IPFTPQQAQA QEITLTPQQA
QALGMPLTAQ QAQELGITLT PQQAQELGIP LTPQQAQALG IPLIPPQAQE LGIPLTPQQA
QALGILLIPP QAQELGIPLT PQQAQALGIP LIPPQAQELG IPLTPQQVQA LGIPLIPPQA
QELEIPLTPQ QAQALGIPLT PQQAQELGIP LTPQQAQELG IPLTPQQAQA QGIPLTPQQA
QALGISLTPQ QAQAQGITLT PQQAQALGVP ITPVNAWVSA VTLTSEQTHA LESPMNLEQA
QEQLLKLGVP LTLDKAHTLG SPLTLKQVQW SHRPFQKSKA SLPTGQSIIS RLSPSLRLSL
ASSAPTAEKS SIFGVSSTPL QISRVPLNQG PFAPGKPLEM GILSEPGKLG APQTLRSSGQ
TLVYGGQSTS AQFPAPQAPP SPGQLPISRA PPTPGQPFIA GVPPTSGQIP SLWAPLSPGQ
PLVPEASSIP GDLLESGPLT FSEQLQEFQP PATAEQSPYL QAPSTPGQHL ATWTLPGRAS
SLWIPPTSRH PPTLWPSPAP GKPQKSWSPS VAKKRLAIIS SLKSKSVLIH PSAPDFKVAQ
VPFTTKKFQM SEVSDTSEET QILRDTFAIE SFRTFQSHFT KYRTPVYQTP YTDERALLTL
MKPTTSPSSL TTLLRTSQIS PLEWYQKSRF PPIDKPWILS SVSDTKKPKV MVPPSSPQEL
EEKRYFVDVE AQKKNLILLN QAIKTCGLPS QLHTMARTLI IEILHMDTVQ LGYLFRKYIA
YRLIQHARNN IMKRLKAIQN TGKGYEARNL HMMLSRLDDY GKKVMQVWTE KQKSLGQKRN
QCLKKMIHVF NQLKKIHELN LSQPIPLIIE EKQIPASTTF VQKPFLKLLM EEDRTSDICK
KFRQQEDQTE AIWNVDLSTS SYPIAEKTSM HSLWAQLGGY PDIPRLLQLE VQSTFRKSLA
SLQSRVKKIP K*
mutated AA sequence MFFKMKNEID NDPESEKCIK DSTIMRREPQ NILSPLMLPN LEIPFSVKDI ISRIERAQLH
RAREDIDMQL SEIMNNVHRI MTRYTLVFNS SSERNVSLTE HKKKQRTNFL EKMATYAKTI
EIREKTLANI LAWLEEWNDV LSEMTLMDVD EHHHWIAQME LLPDTLKAIE NNVKILSRFS
TSFLDEKKKQ KKKILSRGTL WKSWKERVIK RPSTARALRP DQMISDQLAT NTKVSEIQGM
LQELIGTTMF STLENNAIKY ISSTIVNLST ALSMLNDELK CVNFQSSTVY AHETSEAEKE
LSLKIIRDLS NENEMLQQKL QDAEEKCEQL IRSKIVIEQL YAKLSTSSTL KVLPGPSPQS
SRAIIKVGDT EDNMDNILDK ELENIVDEVQ RKETKDSGIK WDSTISYTAQ AERTPDLTEL
RQQPVASEDI SEDSTKDNVS LKKGDFYQED ETDEYQSWKR SHKKATYVYE TSGPNLSDNK
SGQKVSEAKP SQYYELQVLK KKRKEMKSFS EDKSKSPTEA KRKHLSLTET KSQGGKSGTS
MMMLEQFRKV KRESPFDKRP TAAEIKVEPT TESLDKEGKG EIRSLVEPLS MIQFDDTAEP
QKGKIKGKKH HISSGTITSK EEKTEEKEEL TKQVKSHQLV KSLSRVAKET SESTRVLESP
DGKSEQSNLE EFQEAIMAFL KQKIDNIGKA FDKKTVPKEE ELLKRAEAEK LGIIKAKMEE
YFQKVAETVT KILRKYKDTK KEEQVGEKPI KQKKVVSFMP GLHFQKSPIS AKSESSTLLS
YESTDPVINN LIQMILAEIE SERDIPTVST VQKDHKEKEK QRQEQYLQEG QEQMSGMSLK
QQLLGERNLL KEHYEKISEN WEEKKAWLQM KEGKQEQQSQ KQWQEEEMWK EEQKQATPKQ
AEQEEKQKQR GQEEEELPKS SLQRLEEGTQ KMKTQGLLLE KENGQMRQIQ KEAKHLGPHR
RREKGKEKQK PERGLEDLER QIKTKDQMQM KETQPKELEK MVIQTPMTLS PRWKSVLKDV
QRSYEGKEFQ RNLKTLENLP DEKEPISITP PPSLQYSLPG ALPISGQPLT KCIHLTPQQA
QEVGITLTPQ QAQAQGITLT LQQAQELGIP LTPQQAQALE ILFTPQQAQA LGIPLTPQQT
QVQGITLTPQ QDQAPGISLT TQQAQKLGIP LTPQQAQALG IPLTPQQAQE LGIPLTPQQA
QALRVSLTPQ QAQELGIPLT PQQAQALGIT LTLQQAQQLG IPLTPQQAQA LGITLTPKQV
QELGIPLTPQ QAQALGITLT PKQAQELGIP LNPQQAQTLG IPLTPKQAQA LGIPFTPQQA
QALGIPLTPQ QAQTQEITLT PQQAQALGMP LTTQQAQELG IPLTPQHAQA LGMPLTTQQA
QELGIPLTPQ QAQALGMPLT TQQAQELGIP LTPQQAQELG IPFTPQQAQA QEITLTPQQA
QALGMPLTAQ QAQELGITLT PQQAQELGIP LTPQQAQALG IPLIPPQAQE LGIPLTPQQA
QALGILLIPP QAQELGIPLT PQQAQALGIP LIPPQAQELG IPLTPQQVQA LGIPLIPPQA
QELEIPLTPQ QAQALGIPLT PQQAQELGIP LTPQQAQELG IPLTPQQAQA QGIPLTPQQA
QALGISLTPQ QAQAQGITLT PQQAQALGVP ITPVNAWVSA VTLTSEQTHA LESPMNLEQA
QEQLLKLGVP LTLDKAHTLG SPLTLKQVQW SHRPFQKSKA SLPTGQSIIS RLSPSLRLSL
ASSAPTAEKS SIFGVSSTPL QISRVPLNQG PFAPGKPLEM GILSEPGKLG APQTLRSSGQ
TLVYGGQSTS AQFPAPQAPP SPGQLPISRA PPTPGQPFIA GVPPTSGQIP SLWAPLSPGQ
PLVPEASSIP GDLLESGPLT FSEQLQEFQP PATAEQSPYL QAPSTPGQHL ATWTLPGRAS
SLWIPPTSRH PPTLWPSPAP GKPQKSWSPS VAKKRLAIIS SLKSKSVLIH PSAPDFKVAQ
VPFTTKKFQM SEVSDTSEET QILRDTFAIE SFRTFQSHFT KYRTPVYQTP YTDERALLTL
MKPTTSPSSL TTLLRTSQIS PLEWYQKSRF PPIDKPWILS SVSDTKKPKV MVPPSSPQEL
EEKRYFVDVE AQKKNLILLN QAIKTCGLPS QLHTMARTLI IEILHMDTVQ LGYLFRKYIA
YRLIQYARNN IMKRLKAIQN TGKGYEARNL HMMLSRLDDY GKKVMQVWTE KQKSLGQKRN
QCLKKMIHVF NQLKKIHELN LSQPIPLIIE EKQIPASTTF VQKPFLKLLM EEDRTSDICK
KFRQQEDQTE AIWNVDLSTS SYPIAEKTSM HSLWAQLGGY PDIPRLLQLE VQSTFRKSLA
SLQSRVKKIP K*
speed 0.43 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems