Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 4 transcript(s)...
Querying Taster for transcript #1: ENST00000537672
Querying Taster for transcript #2: ENST00000354310
Querying Taster for transcript #3: ENST00000293745
Querying Taster for transcript #4: ENST00000398066
MT speed 0 s - this script 4.640555 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
KRT72polymorphism_automatic0.024500207807523simple_aaeaffectedY76Csingle base exchangers12833456show file
KRT72polymorphism_automatic0.091491736599486simple_aaeaffectedY264Csingle base exchangers12833456show file
KRT72polymorphism_automatic0.091491736599486simple_aaeaffectedY264Csingle base exchangers12833456show file
KRT72polymorphism_automatic0.091491736599486simple_aaeaffectedY264Csingle base exchangers12833456show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.975499792192477 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:52986187T>CN/A show variant in all transcripts   IGV
HGNC symbol KRT72
Ensembl transcript ID ENST00000398066
Genbank transcript ID N/A
UniProt peptide Q14CN4
alteration type single base exchange
alteration region CDS
DNA changes c.227A>G
cDNA.910A>G
g.9136A>G
AA changes Y76C Score: 194 explain score(s)
position(s) of altered AA
if AA alteration in CDS
76
frameshift no
known variant Reference ID: rs12833456
databasehomozygous (C/C)heterozygousallele carriers
1000G38510971482
ExAC96871339323080
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9911
2.0350.999
(flanking)0.2410.973
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased9137wt: 0.7618 / mu: 0.7836 (marginal change - not scored)wt: AAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGCT
mu: AAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGCT
 ttat|GAAG
Donor increased9135wt: 0.60 / mu: 0.99wt: GCCTTTATGAAGGGG
mu: GCCTTTGTGAAGGGG
 CTTT|atga
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      76LTDEIKFFKCLYEGEITQIQSHIS
mutated  not conserved    76LTDEIKFFKCLCEGEITQIQSHI
Ptroglodytes  all identical  ENSPTRG00000004984  264LTDEIKFFKCLYEGEITQIQSHI
Mmulatta  no homologue    
Fcatus  all identical  ENSFCAG00000000289  122LTDEIKFFKCLYEGEIAQMQSHI
Mmusculus  all conserved  ENSMUSG00000056605  273LTDDIKFFKVLFEGEIAQMQSHI
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
1124REGIONHead.lost
1096COMPBIASGly-rich.lost
125160REGIONCoil 1A.might get lost (downstream of altered splice site)
125434REGIONRod.might get lost (downstream of altered splice site)
161179REGIONLinker 1.might get lost (downstream of altered splice site)
180271REGIONCoil 1B.might get lost (downstream of altered splice site)
272295REGIONLinker 12.might get lost (downstream of altered splice site)
296434REGIONCoil 2.might get lost (downstream of altered splice site)
376376SITEStutter.might get lost (downstream of altered splice site)
435511REGIONTail.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 972 / 972
position (AA) of stopcodon in wt / mu AA sequence 324 / 324
position of stopcodon in wt / mu cDNA 1655 / 1655
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 684 / 684
chromosome 12
strand -1
last intron/exon boundary 1465
theoretical NMD boundary in CDS 731
length of CDS 972
coding sequence (CDS) position 227
cDNA position
(for ins/del: last normal base / first normal base)
910
gDNA position
(for ins/del: last normal base / first normal base)
9136
chromosomal position
(for ins/del: last normal base / first normal base)
52986187
original gDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGC
altered gDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGC
original cDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGAGATCACTCAGA
altered cDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGAGATCACTCAGA
wildtype AA sequence MLSGDGVRLD SELRNMQDLV EDYKKRYEVE INRRTAAENE FVVLKKDVDA AYMNKVELQA
KVDSLTDEIK FFKCLYEGEI TQIQSHISDT SIVLSMDNNR DLDLDSIIAE VRAQYEEIAL
KSKAEAETLY QTKIQELQVT AGQHGDDLKL TKAEISELNR LIQRIRSEIG NVKKQCADLE
TAIADAEQRG DCALKDARAK LDELEGALHQ AKEELARMLR EYQELVSLKL ALDMEIATYR
KLLESEECRM SGEYPNSVSI SVISSTNAGA GGAGFSMGFG ASSSYSYKTA AADVKTKGSC
GSELKDPLAK TSGSSCATKK ASR*
mutated AA sequence MLSGDGVRLD SELRNMQDLV EDYKKRYEVE INRRTAAENE FVVLKKDVDA AYMNKVELQA
KVDSLTDEIK FFKCLCEGEI TQIQSHISDT SIVLSMDNNR DLDLDSIIAE VRAQYEEIAL
KSKAEAETLY QTKIQELQVT AGQHGDDLKL TKAEISELNR LIQRIRSEIG NVKKQCADLE
TAIADAEQRG DCALKDARAK LDELEGALHQ AKEELARMLR EYQELVSLKL ALDMEIATYR
KLLESEECRM SGEYPNSVSI SVISSTNAGA GGAGFSMGFG ASSSYSYKTA AADVKTKGSC
GSELKDPLAK TSGSSCATKK ASR*
speed 0.96 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.908508263400514 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:52986187T>CN/A show variant in all transcripts   IGV
HGNC symbol KRT72
Ensembl transcript ID ENST00000354310
Genbank transcript ID NM_001146226
UniProt peptide Q14CN4
alteration type single base exchange
alteration region CDS
DNA changes c.791A>G
cDNA.877A>G
g.9136A>G
AA changes Y264C Score: 194 explain score(s)
position(s) of altered AA
if AA alteration in CDS
264
frameshift no
known variant Reference ID: rs12833456
databasehomozygous (C/C)heterozygousallele carriers
1000G38510971482
ExAC96871339323080
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9911
2.0350.999
(flanking)0.2410.973
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased9137wt: 0.7618 / mu: 0.7836 (marginal change - not scored)wt: AAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGCT
mu: AAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGCT
 ttat|GAAG
Donor increased9135wt: 0.60 / mu: 0.99wt: GCCTTTATGAAGGGG
mu: GCCTTTGTGAAGGGG
 CTTT|atga
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      264LTDEIKFFKCLYEGEITQIQSHIS
mutated  not conserved    264LTDEIKFFKCLCEGEITQIQSHI
Ptroglodytes  all identical  ENSPTRG00000004984  264LTDEIKFFKCLYEGEITQIQSHI
Mmulatta  no homologue    
Fcatus  all identical  ENSFCAG00000000289  122LYEGEIAQMQSHI
Mmusculus  all conserved  ENSMUSG00000056605  273LTDDIKFFKVLFEGEIAQMQSHI
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
125434REGIONRod.lost
180271REGIONCoil 1B.lost
272295REGIONLinker 12.might get lost (downstream of altered splice site)
296434REGIONCoil 2.might get lost (downstream of altered splice site)
376376SITEStutter.might get lost (downstream of altered splice site)
435511REGIONTail.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1410 / 1410
position (AA) of stopcodon in wt / mu AA sequence 470 / 470
position of stopcodon in wt / mu cDNA 1496 / 1496
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 87 / 87
chromosome 12
strand -1
last intron/exon boundary 1306
theoretical NMD boundary in CDS 1169
length of CDS 1410
coding sequence (CDS) position 791
cDNA position
(for ins/del: last normal base / first normal base)
877
gDNA position
(for ins/del: last normal base / first normal base)
9136
chromosomal position
(for ins/del: last normal base / first normal base)
52986187
original gDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGC
altered gDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGC
original cDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGAGATCACTCAGA
altered cDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGAGATCACTCAGA
wildtype AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLYEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KCADLETAIA DAEQRGDCAL KDARAKLDEL EGALHQAKEE
LARMLREYQE LVSLKLALDM EIATYRKLLE SEECRMSGEY PNSVSISVIS STNAGAGGAG
FSMGFGASSS YSYKTAAADV KTKGSCGSEL KDPLAKTSGS SCATKKASR*
mutated AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLCEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KCADLETAIA DAEQRGDCAL KDARAKLDEL EGALHQAKEE
LARMLREYQE LVSLKLALDM EIATYRKLLE SEECRMSGEY PNSVSISVIS STNAGAGGAG
FSMGFGASSS YSYKTAAADV KTKGSCGSEL KDPLAKTSGS SCATKKASR*
speed 0.82 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.908508263400514 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:52986187T>CN/A show variant in all transcripts   IGV
HGNC symbol KRT72
Ensembl transcript ID ENST00000537672
Genbank transcript ID NM_001146225
UniProt peptide Q14CN4
alteration type single base exchange
alteration region CDS
DNA changes c.791A>G
cDNA.802A>G
g.9136A>G
AA changes Y264C Score: 194 explain score(s)
position(s) of altered AA
if AA alteration in CDS
264
frameshift no
known variant Reference ID: rs12833456
databasehomozygous (C/C)heterozygousallele carriers
1000G38510971482
ExAC96871339323080
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9911
2.0350.999
(flanking)0.2410.973
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased9137wt: 0.7618 / mu: 0.7836 (marginal change - not scored)wt: AAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGCT
mu: AAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGCT
 ttat|GAAG
Donor increased9135wt: 0.60 / mu: 0.99wt: GCCTTTATGAAGGGG
mu: GCCTTTGTGAAGGGG
 CTTT|atga
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      264LTDEIKFFKCLYEGEITQIQSHIS
mutated  not conserved    264LTDEIKFFKCLCEGEITQIQSHI
Ptroglodytes  all identical  ENSPTRG00000004984  264LTDEIKFFKCLYEGEITQIQSHI
Mmulatta  no homologue    
Fcatus  all identical  ENSFCAG00000000289  122LYEGEIAQMQSHI
Mmusculus  all conserved  ENSMUSG00000056605  273LTDDIKFFKVLFEGEIAQMQSHI
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
125434REGIONRod.lost
180271REGIONCoil 1B.lost
272295REGIONLinker 12.might get lost (downstream of altered splice site)
296434REGIONCoil 2.might get lost (downstream of altered splice site)
376376SITEStutter.might get lost (downstream of altered splice site)
435511REGIONTail.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1536 / 1536
position (AA) of stopcodon in wt / mu AA sequence 512 / 512
position of stopcodon in wt / mu cDNA 1547 / 1547
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 12 / 12
chromosome 12
strand -1
last intron/exon boundary 1567
theoretical NMD boundary in CDS 1505
length of CDS 1536
coding sequence (CDS) position 791
cDNA position
(for ins/del: last normal base / first normal base)
802
gDNA position
(for ins/del: last normal base / first normal base)
9136
chromosomal position
(for ins/del: last normal base / first normal base)
52986187
original gDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGC
altered gDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGC
original cDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGAGATCACTCAGA
altered cDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGAGATCACTCAGA
wildtype AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLYEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KIQELQVTAG QHGDDLKLTK AEISELNRLI QRIRSEIGNV
KKQCADLETA IADAEQRGDC ALKDARAKLD ELEGALHQAK EELARMLREY QELVSLKLAL
DMEIATYRKL LESEECRMSG EYPNSVSISV ISSTNAGAGG AGFSMGFGAS SSYSYKTAAA
DVKTKGSCGS ELKDPLAKTS GSSCATKKAS R*
mutated AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLCEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KIQELQVTAG QHGDDLKLTK AEISELNRLI QRIRSEIGNV
KKQCADLETA IADAEQRGDC ALKDARAKLD ELEGALHQAK EELARMLREY QELVSLKLAL
DMEIATYRKL LESEECRMSG EYPNSVSISV ISSTNAGAGG AGFSMGFGAS SSYSYKTAAA
DVKTKGSCGS ELKDPLAKTS GSSCATKKAS R*
speed 0.75 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.908508263400514 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr12:52986187T>CN/A show variant in all transcripts   IGV
HGNC symbol KRT72
Ensembl transcript ID ENST00000293745
Genbank transcript ID NM_080747
UniProt peptide Q14CN4
alteration type single base exchange
alteration region CDS
DNA changes c.791A>G
cDNA.877A>G
g.9136A>G
AA changes Y264C Score: 194 explain score(s)
position(s) of altered AA
if AA alteration in CDS
264
frameshift no
known variant Reference ID: rs12833456
databasehomozygous (C/C)heterozygousallele carriers
1000G38510971482
ExAC96871339323080
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9911
2.0350.999
(flanking)0.2410.973
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased9137wt: 0.7618 / mu: 0.7836 (marginal change - not scored)wt: AAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGCT
mu: AAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGCT
 ttat|GAAG
Donor increased9135wt: 0.60 / mu: 0.99wt: GCCTTTATGAAGGGG
mu: GCCTTTGTGAAGGGG
 CTTT|atga
distance from splice site 8
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      264LTDEIKFFKCLYEGEITQIQSHIS
mutated  not conserved    264LTDEIKFFKCLCEGEITQIQSHI
Ptroglodytes  all identical  ENSPTRG00000004984  264LTDEIKFFKCLYEGEITQIQSHI
Mmulatta  no homologue    
Fcatus  all identical  ENSFCAG00000000289  122LYEGEIAQMQSHI
Mmusculus  all conserved  ENSMUSG00000056605  273LTDDIKFFKVLFEGEIAQMQSHI
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
125434REGIONRod.lost
180271REGIONCoil 1B.lost
272295REGIONLinker 12.might get lost (downstream of altered splice site)
296434REGIONCoil 2.might get lost (downstream of altered splice site)
376376SITEStutter.might get lost (downstream of altered splice site)
435511REGIONTail.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1536 / 1536
position (AA) of stopcodon in wt / mu AA sequence 512 / 512
position of stopcodon in wt / mu cDNA 1622 / 1622
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 87 / 87
chromosome 12
strand -1
last intron/exon boundary 1432
theoretical NMD boundary in CDS 1295
length of CDS 1536
coding sequence (CDS) position 791
cDNA position
(for ins/del: last normal base / first normal base)
877
gDNA position
(for ins/del: last normal base / first normal base)
9136
chromosomal position
(for ins/del: last normal base / first normal base)
52986187
original gDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGTAAGGACTTGGC
altered gDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGTAAGGACTTGGC
original cDNA sequence snippet TAAATTCTTCAAGTGCCTTTATGAAGGGGAGATCACTCAGA
altered cDNA sequence snippet TAAATTCTTCAAGTGCCTTTGTGAAGGGGAGATCACTCAGA
wildtype AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLYEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KIQELQVTAG QHGDDLKLTK AEISELNRLI QRIRSEIGNV
KKQCADLETA IADAEQRGDC ALKDARAKLD ELEGALHQAK EELARMLREY QELVSLKLAL
DMEIATYRKL LESEECRMSG EYPNSVSISV ISSTNAGAGG AGFSMGFGAS SSYSYKTAAA
DVKTKGSCGS ELKDPLAKTS GSSCATKKAS R*
mutated AA sequence MSRQLTHFPR GERLGFSGCS AVLSGGIGSS SASFRARVKG SASFGSKSLS CLGGSRSLAL
SAAARRGGGR LGGFVGTAFG SAGLGPKCPS VCPPGGIPQV TVNKSLLAPL NVEMDPEIQR
VRAQEREQIK ALNNKFASFI DKVRFLEQQN QVLETKWNLL QQLDLNNCRK NLEPIYEGYI
SNLQKQLEML SGDGVRLDSE LRNMQDLVED YKKRYEVEIN RRTAAENEFV VLKKDVDAAY
MNKVELQAKV DSLTDEIKFF KCLCEGEITQ IQSHISDTSI VLSMDNNRDL DLDSIIAEVR
AQYEEIALKS KAEAETLYQT KIQELQVTAG QHGDDLKLTK AEISELNRLI QRIRSEIGNV
KKQCADLETA IADAEQRGDC ALKDARAKLD ELEGALHQAK EELARMLREY QELVSLKLAL
DMEIATYRKL LESEECRMSG EYPNSVSISV ISSTNAGAGG AGFSMGFGAS SSYSYKTAAA
DVKTKGSCGS ELKDPLAKTS GSSCATKKAS R*
speed 0.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems