Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 3 transcript(s)...
Querying Taster for transcript #1: ENST00000545908
Querying Taster for transcript #2: ENST00000216605
Querying Taster for transcript #3: ENST00000555709
MT speed 3.6 s - this script 4.767549 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
MTHFD1polymorphism_automatic0.970606017747621simple_aaeaffectedR709Qsingle base exchangers2236225show file
MTHFD1polymorphism_automatic0.970606017747621simple_aaeaffectedR709Qsingle base exchangers2236225show file
MTHFD1polymorphism_automatic0.970606017747621simple_aaeaffectedR653Qsingle base exchangers2236225show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.0293939822523791 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM022820)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr14:64908845G>AN/A show variant in all transcripts   IGV
HGNC symbol MTHFD1
Ensembl transcript ID ENST00000545908
Genbank transcript ID N/A
UniProt peptide P11586
alteration type single base exchange
alteration region CDS
DNA changes c.2126G>A
cDNA.2355G>A
g.54097G>A
AA changes R709Q Score: 43 explain score(s)
position(s) of altered AA
if AA alteration in CDS
709
frameshift no
known variant Reference ID: rs2236225
databasehomozygous (A/A)heterozygousallele carriers
1000G3579981355
ExAC12202836320565

known disease mutation at this position, please check HGMD for details (HGMD ID CM022820)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)1.0881
3.9951
(flanking)1.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased54091wt: 0.2176 / mu: 0.2475 (marginal change - not scored)wt: TGGCAATTCCTCCATCATTGCAGACCGGATCGCACTCAAGC
mu: TGGCAATTCCTCCATCATTGCAGACCAGATCGCACTCAAGC
 ttgc|AGAC
Acc marginally increased54097wt: 0.2298 / mu: 0.2478 (marginal change - not scored)wt: TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
mu: TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
 accg|GATC
Donor increased54092wt: 0.54 / mu: 0.68wt: ATTGCAGACCGGATC
mu: ATTGCAGACCAGATC
 TGCA|gacc
distance from splice site 39
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      709IAHGNSSIIADRIALKLVGPEGFV
mutated  all conserved    709IAHGNSSIIADQIALKLVGPEGF
Ptroglodytes  all identical  ENSPTRG00000006435  663IAHGNSSIIADRIALKLVGPEGF
Mmulatta  all identical  ENSMMUG00000001319  652IAHGNSSILADRIALKLVG
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000021048  653IAHGNSSIIADRIALKLVG
Ggallus  all conserved  ENSGALG00000011797  653IAHGNSSVLADKIALKLVG
Trubripes  all conserved  ENSTRUG00000012569  655IAHGNSSILADKIALKLVGP
Drerio  all conserved  ENSDARG00000040492  652IAHGNSSILADKIALKLVGPQ
Dmelanogaster  not conserved  FBgn0020385  686CNSIIADEVGLKLVGKNGF
Celegans  all conserved  K07E3.4  356IAHGQSSILADKVALKLAG
Xtropicalis  all conserved  ENSXETG00000022511  279IAHGNSSILADKIALKLVGPEGF
protein features
start (aa)end (aa)featuredetails 
306935REGIONFormyltetrahydrofolate synthetase.lost
786786MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 3063 / 3063
position (AA) of stopcodon in wt / mu AA sequence 1021 / 1021
position of stopcodon in wt / mu cDNA 3292 / 3292
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 230 / 230
chromosome 14
strand 1
last intron/exon boundary 3116
theoretical NMD boundary in CDS 2836
length of CDS 3063
coding sequence (CDS) position 2126
cDNA position
(for ins/del: last normal base / first normal base)
2355
gDNA position
(for ins/del: last normal base / first normal base)
54097
chromosomal position
(for ins/del: last normal base / first normal base)
64908845
original gDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered gDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
original cDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered cDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
wildtype AA sequence MRHRVCRGRS GQGRRRSSVI PWPVPKHVGW VVLLGCGGSG TSILVVSIVG SGLIKAMAPA
EILNGKEISA QIRARLKNQV TQLKEQVPGF TPRLAILQVG NRDDSNLYIN VKLKAAEEIG
IKATHIKLPR TTTESEVMKY ITSLNEDSTV HGFLVQLPLD SENSINTEEV INAIAPEKDV
DGLTSINAGK LARGDLNDCF IPCTPKGCLE LIKETGVPIA GRHAVVVGRS KIVGAPMHDL
LLWNNATVTT CHSKTAHLDE EVNKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD
KKPNGRKVVG DVAYDEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF LEKFKPGKWM
IQYNNLNLKT PVPSDIDISR SCKPKPIGKL AREIGLLSEE VELYGETKAK VLLSALERLK
HRPDGKYVVV TGITPTPLGE GKSTTTIGLV QALGAHLYQN VFACVRQPSQ GPTFGIKGGA
AGGGYSQVIP MEEFNLHLTG DIHAITAANN LVAAAIDARI FHELTQTDKA LFNRLVPSVN
GVRRFSDIQI RRLKRLGIEK TDPTTLTDEE INRFARLDID PETITWQRVL DTNDRFLRKI
TIGQAPTEKG HTRTAQFDIS VASEIMAVLA LTTSLEDMRE RLGKMVVASS KKGEPVSAED
LGVSGALTVL MKDAIKPNLM QTLEGTPVFV HAGPFANIAH GNSSIIADRI ALKLVGPEGF
VVTEAGFGAD IGMEKFFNIK CRYSGLCPHV VVLVATVRAL KMHGGGPTVT AGLPLPKAYI
QENLELVEKG FSNLKKQIEN ARMFGIPVVV AVNAFKTDTE SELDLISRLS REHGAFDAVK
CTHWAEGGKG ALALAQAVQR AAQAPSSFQL LYDLKLPVED KIRIIAQKIY GADDIELLPE
AQHKAEVYTK QGFGNLPICM AKTHLSLSHN PEQKGVPTGF ILPIRDIRAS VGAGFLYPLV
GTITIHLQEA TLKVWPVSIQ AHWELGSISK PREVSPCPED LKLIVGVSPE VIFSLNSHHV
*
mutated AA sequence MRHRVCRGRS GQGRRRSSVI PWPVPKHVGW VVLLGCGGSG TSILVVSIVG SGLIKAMAPA
EILNGKEISA QIRARLKNQV TQLKEQVPGF TPRLAILQVG NRDDSNLYIN VKLKAAEEIG
IKATHIKLPR TTTESEVMKY ITSLNEDSTV HGFLVQLPLD SENSINTEEV INAIAPEKDV
DGLTSINAGK LARGDLNDCF IPCTPKGCLE LIKETGVPIA GRHAVVVGRS KIVGAPMHDL
LLWNNATVTT CHSKTAHLDE EVNKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD
KKPNGRKVVG DVAYDEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF LEKFKPGKWM
IQYNNLNLKT PVPSDIDISR SCKPKPIGKL AREIGLLSEE VELYGETKAK VLLSALERLK
HRPDGKYVVV TGITPTPLGE GKSTTTIGLV QALGAHLYQN VFACVRQPSQ GPTFGIKGGA
AGGGYSQVIP MEEFNLHLTG DIHAITAANN LVAAAIDARI FHELTQTDKA LFNRLVPSVN
GVRRFSDIQI RRLKRLGIEK TDPTTLTDEE INRFARLDID PETITWQRVL DTNDRFLRKI
TIGQAPTEKG HTRTAQFDIS VASEIMAVLA LTTSLEDMRE RLGKMVVASS KKGEPVSAED
LGVSGALTVL MKDAIKPNLM QTLEGTPVFV HAGPFANIAH GNSSIIADQI ALKLVGPEGF
VVTEAGFGAD IGMEKFFNIK CRYSGLCPHV VVLVATVRAL KMHGGGPTVT AGLPLPKAYI
QENLELVEKG FSNLKKQIEN ARMFGIPVVV AVNAFKTDTE SELDLISRLS REHGAFDAVK
CTHWAEGGKG ALALAQAVQR AAQAPSSFQL LYDLKLPVED KIRIIAQKIY GADDIELLPE
AQHKAEVYTK QGFGNLPICM AKTHLSLSHN PEQKGVPTGF ILPIRDIRAS VGAGFLYPLV
GTITIHLQEA TLKVWPVSIQ AHWELGSISK PREVSPCPED LKLIVGVSPE VIFSLNSHHV
*
speed 1.29 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.0293939822523791 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM022820)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr14:64908845G>AN/A show variant in all transcripts   IGV
HGNC symbol MTHFD1
Ensembl transcript ID ENST00000216605
Genbank transcript ID N/A
UniProt peptide P11586
alteration type single base exchange
alteration region CDS
DNA changes c.2126G>A
cDNA.2146G>A
g.54097G>A
AA changes R709Q Score: 43 explain score(s)
position(s) of altered AA
if AA alteration in CDS
709
frameshift no
known variant Reference ID: rs2236225
databasehomozygous (A/A)heterozygousallele carriers
1000G3579981355
ExAC12202836320565

known disease mutation at this position, please check HGMD for details (HGMD ID CM022820)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)1.0881
3.9951
(flanking)1.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased54091wt: 0.2176 / mu: 0.2475 (marginal change - not scored)wt: TGGCAATTCCTCCATCATTGCAGACCGGATCGCACTCAAGC
mu: TGGCAATTCCTCCATCATTGCAGACCAGATCGCACTCAAGC
 ttgc|AGAC
Acc marginally increased54097wt: 0.2298 / mu: 0.2478 (marginal change - not scored)wt: TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
mu: TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
 accg|GATC
Donor increased54092wt: 0.54 / mu: 0.68wt: ATTGCAGACCGGATC
mu: ATTGCAGACCAGATC
 TGCA|gacc
distance from splice site 39
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      709IAHGNSSIIADRIALKLVGPEGFV
mutated  all conserved    709IAHGNSSIIADQIALKLVGPEGF
Ptroglodytes  all identical  ENSPTRG00000006435  663IAHGNSSIIADRIALKLVGPEGF
Mmulatta  all identical  ENSMMUG00000001319  652IAHGNSSILADRIALKLVG
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000021048  653IAHGNSSIIADRIALKLVG
Ggallus  all conserved  ENSGALG00000011797  653IAHGNSSVLADKIALKLVG
Trubripes  all conserved  ENSTRUG00000012569  655IAHGNSSILADKIALKLVGP
Drerio  all conserved  ENSDARG00000040492  652IAHGNSSILADKIALKLVGPQ
Dmelanogaster  not conserved  FBgn0020385  686CNSIIADEVGLKLVGKNGF
Celegans  all conserved  K07E3.4  356IAHGQSSILADKVALKLAG
Xtropicalis  all conserved  ENSXETG00000022511  279IAHGNSSILADKIALKLVGPEGF
protein features
start (aa)end (aa)featuredetails 
306935REGIONFormyltetrahydrofolate synthetase.lost
786786MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2976 / 2976
position (AA) of stopcodon in wt / mu AA sequence 992 / 992
position of stopcodon in wt / mu cDNA 2996 / 2996
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 21 / 21
chromosome 14
strand 1
last intron/exon boundary 3001
theoretical NMD boundary in CDS 2930
length of CDS 2976
coding sequence (CDS) position 2126
cDNA position
(for ins/del: last normal base / first normal base)
2146
gDNA position
(for ins/del: last normal base / first normal base)
54097
chromosomal position
(for ins/del: last normal base / first normal base)
64908845
original gDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered gDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
original cDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered cDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
wildtype AA sequence MRHRVCRGRS GQGRRRSSVI PWPVPKHVGW VVLLGCGGSG TSILVVSIVG SGLIKAMAPA
EILNGKEISA QIRARLKNQV TQLKEQVPGF TPRLAILQVG NRDDSNLYIN VKLKAAEEIG
IKATHIKLPR TTTESEVMKY ITSLNEDSTV HGFLVQLPLD SENSINTEEV INAIAPEKDV
DGLTSINAGK LARGDLNDCF IPCTPKGCLE LIKETGVPIA GRHAVVVGRS KIVGAPMHDL
LLWNNATVTT CHSKTAHLDE EVNKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD
KKPNGRKVVG DVAYDEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF LEKFKPGKWM
IQYNNLNLKT PVPSDIDISR SCKPKPIGKL AREIGLLSEE VELYGETKAK VLLSALERLK
HRPDGKYVVV TGITPTPLGE GKSTTTIGLV QALGAHLYQN VFACVRQPSQ GPTFGIKGGA
AGGGYSQVIP MEEFNLHLTG DIHAITAANN LVAAAIDARI FHELTQTDKA LFNRLVPSVN
GVRRFSDIQI RRLKRLGIEK TDPTTLTDEE INRFARLDID PETITWQRVL DTNDRFLRKI
TIGQAPTEKG HTRTAQFDIS VASEIMAVLA LTTSLEDMRE RLGKMVVASS KKGEPVSAED
LGVSGALTVL MKDAIKPNLM QTLEGTPVFV HAGPFANIAH GNSSIIADRI ALKLVGPEGF
VVTEAGFGAD IGMEKFFNIK CRYSGLCPHV VVLVATVRAL KMHGGGPTVT AGLPLPKAYI
QENLELVEKG FSNLKKQIEN ARMFGIPVVV AVNAFKTDTE SELDLISRLS REHGAFDAVK
CTHWAEGGKG ALALAQAVQR AAQAPSSFQL LYDLKLPVED KIRIIAQKIY GADDIELLPE
AQHKAEVYTK QGFGNLPICM AKTHLSLSHN PEQKGVPTGF ILPIRDIRAS VGAGFLYPLV
GTMSTMPGLP TRPCFYDIDL DPETEQVNGL F*
mutated AA sequence MRHRVCRGRS GQGRRRSSVI PWPVPKHVGW VVLLGCGGSG TSILVVSIVG SGLIKAMAPA
EILNGKEISA QIRARLKNQV TQLKEQVPGF TPRLAILQVG NRDDSNLYIN VKLKAAEEIG
IKATHIKLPR TTTESEVMKY ITSLNEDSTV HGFLVQLPLD SENSINTEEV INAIAPEKDV
DGLTSINAGK LARGDLNDCF IPCTPKGCLE LIKETGVPIA GRHAVVVGRS KIVGAPMHDL
LLWNNATVTT CHSKTAHLDE EVNKGDILVV ATGQPEMVKG EWIKPGAIVI DCGINYVPDD
KKPNGRKVVG DVAYDEAKER ASFITPVPGG VGPMTVAMLM QSTVESAKRF LEKFKPGKWM
IQYNNLNLKT PVPSDIDISR SCKPKPIGKL AREIGLLSEE VELYGETKAK VLLSALERLK
HRPDGKYVVV TGITPTPLGE GKSTTTIGLV QALGAHLYQN VFACVRQPSQ GPTFGIKGGA
AGGGYSQVIP MEEFNLHLTG DIHAITAANN LVAAAIDARI FHELTQTDKA LFNRLVPSVN
GVRRFSDIQI RRLKRLGIEK TDPTTLTDEE INRFARLDID PETITWQRVL DTNDRFLRKI
TIGQAPTEKG HTRTAQFDIS VASEIMAVLA LTTSLEDMRE RLGKMVVASS KKGEPVSAED
LGVSGALTVL MKDAIKPNLM QTLEGTPVFV HAGPFANIAH GNSSIIADQI ALKLVGPEGF
VVTEAGFGAD IGMEKFFNIK CRYSGLCPHV VVLVATVRAL KMHGGGPTVT AGLPLPKAYI
QENLELVEKG FSNLKKQIEN ARMFGIPVVV AVNAFKTDTE SELDLISRLS REHGAFDAVK
CTHWAEGGKG ALALAQAVQR AAQAPSSFQL LYDLKLPVED KIRIIAQKIY GADDIELLPE
AQHKAEVYTK QGFGNLPICM AKTHLSLSHN PEQKGVPTGF ILPIRDIRAS VGAGFLYPLV
GTMSTMPGLP TRPCFYDIDL DPETEQVNGL F*
speed 0.93 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.0293939822523791 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM022820)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr14:64908845G>AN/A show variant in all transcripts   IGV
HGNC symbol MTHFD1
Ensembl transcript ID ENST00000555709
Genbank transcript ID NM_005956
UniProt peptide P11586
alteration type single base exchange
alteration region CDS
DNA changes c.1958G>A
cDNA.2345G>A
g.54097G>A
AA changes R653Q Score: 43 explain score(s)
position(s) of altered AA
if AA alteration in CDS
653
frameshift no
known variant Reference ID: rs2236225
databasehomozygous (A/A)heterozygousallele carriers
1000G3579981355
ExAC12202836320565

known disease mutation at this position, please check HGMD for details (HGMD ID CM022820)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)1.0881
3.9951
(flanking)1.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased54091wt: 0.2176 / mu: 0.2475 (marginal change - not scored)wt: TGGCAATTCCTCCATCATTGCAGACCGGATCGCACTCAAGC
mu: TGGCAATTCCTCCATCATTGCAGACCAGATCGCACTCAAGC
 ttgc|AGAC
Acc marginally increased54097wt: 0.2298 / mu: 0.2478 (marginal change - not scored)wt: TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
mu: TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
 accg|GATC
Donor increased54092wt: 0.54 / mu: 0.68wt: ATTGCAGACCGGATC
mu: ATTGCAGACCAGATC
 TGCA|gacc
distance from splice site 39
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      653IAHGNSSIIADRIALKLVGPEGFV
mutated  all conserved    653IAHGNSSIIADQIALKLVG
Ptroglodytes  all identical  ENSPTRG00000006435  663IAHGNSSIIADRIALKLVG
Mmulatta  all identical  ENSMMUG00000001319  652IAHGNSSILADRIALKLVG
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000021048  653IAHGNSSIIADRIALKLVG
Ggallus  all conserved  ENSGALG00000011797  653IAHGNSSVLADKIALKLVG
Trubripes  all conserved  ENSTRUG00000012569  655IAHGNSSILADKIALKLVGP
Drerio  all conserved  ENSDARG00000040492  652IAHGNSSILADKIALKLVGPQ
Dmelanogaster  not conserved  FBgn0020385  686IAHGCNSIIADEVGLKLVG
Celegans  all conserved  K07E3.4  356IAHGQSSILADKVALKLAG
Xtropicalis  all conserved  ENSXETG00000022511  279IAHGNSSILADKIALKLVGPEGF
protein features
start (aa)end (aa)featuredetails 
306935REGIONFormyltetrahydrofolate synthetase.lost
786786MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2808 / 2808
position (AA) of stopcodon in wt / mu AA sequence 936 / 936
position of stopcodon in wt / mu cDNA 3195 / 3195
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 388 / 388
chromosome 14
strand 1
last intron/exon boundary 3200
theoretical NMD boundary in CDS 2762
length of CDS 2808
coding sequence (CDS) position 1958
cDNA position
(for ins/del: last normal base / first normal base)
2345
gDNA position
(for ins/del: last normal base / first normal base)
54097
chromosomal position
(for ins/del: last normal base / first normal base)
64908845
original gDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered gDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
original cDNA sequence snippet TTCCTCCATCATTGCAGACCGGATCGCACTCAAGCTTGTTG
altered cDNA sequence snippet TTCCTCCATCATTGCAGACCAGATCGCACTCAAGCTTGTTG
wildtype AA sequence MAPAEILNGK EISAQIRARL KNQVTQLKEQ VPGFTPRLAI LQVGNRDDSN LYINVKLKAA
EEIGIKATHI KLPRTTTESE VMKYITSLNE DSTVHGFLVQ LPLDSENSIN TEEVINAIAP
EKDVDGLTSI NAGKLARGDL NDCFIPCTPK GCLELIKETG VPIAGRHAVV VGRSKIVGAP
MHDLLLWNNA TVTTCHSKTA HLDEEVNKGD ILVVATGQPE MVKGEWIKPG AIVIDCGINY
VPDDKKPNGR KVVGDVAYDE AKERASFITP VPGGVGPMTV AMLMQSTVES AKRFLEKFKP
GKWMIQYNNL NLKTPVPSDI DISRSCKPKP IGKLAREIGL LSEEVELYGE TKAKVLLSAL
ERLKHRPDGK YVVVTGITPT PLGEGKSTTT IGLVQALGAH LYQNVFACVR QPSQGPTFGI
KGGAAGGGYS QVIPMEEFNL HLTGDIHAIT AANNLVAAAI DARIFHELTQ TDKALFNRLV
PSVNGVRRFS DIQIRRLKRL GIEKTDPTTL TDEEINRFAR LDIDPETITW QRVLDTNDRF
LRKITIGQAP TEKGHTRTAQ FDISVASEIM AVLALTTSLE DMRERLGKMV VASSKKGEPV
SAEDLGVSGA LTVLMKDAIK PNLMQTLEGT PVFVHAGPFA NIAHGNSSII ADRIALKLVG
PEGFVVTEAG FGADIGMEKF FNIKCRYSGL CPHVVVLVAT VRALKMHGGG PTVTAGLPLP
KAYIQENLEL VEKGFSNLKK QIENARMFGI PVVVAVNAFK TDTESELDLI SRLSREHGAF
DAVKCTHWAE GGKGALALAQ AVQRAAQAPS SFQLLYDLKL PVEDKIRIIA QKIYGADDIE
LLPEAQHKAE VYTKQGFGNL PICMAKTHLS LSHNPEQKGV PTGFILPIRD IRASVGAGFL
YPLVGTMSTM PGLPTRPCFY DIDLDPETEQ VNGLF*
mutated AA sequence MAPAEILNGK EISAQIRARL KNQVTQLKEQ VPGFTPRLAI LQVGNRDDSN LYINVKLKAA
EEIGIKATHI KLPRTTTESE VMKYITSLNE DSTVHGFLVQ LPLDSENSIN TEEVINAIAP
EKDVDGLTSI NAGKLARGDL NDCFIPCTPK GCLELIKETG VPIAGRHAVV VGRSKIVGAP
MHDLLLWNNA TVTTCHSKTA HLDEEVNKGD ILVVATGQPE MVKGEWIKPG AIVIDCGINY
VPDDKKPNGR KVVGDVAYDE AKERASFITP VPGGVGPMTV AMLMQSTVES AKRFLEKFKP
GKWMIQYNNL NLKTPVPSDI DISRSCKPKP IGKLAREIGL LSEEVELYGE TKAKVLLSAL
ERLKHRPDGK YVVVTGITPT PLGEGKSTTT IGLVQALGAH LYQNVFACVR QPSQGPTFGI
KGGAAGGGYS QVIPMEEFNL HLTGDIHAIT AANNLVAAAI DARIFHELTQ TDKALFNRLV
PSVNGVRRFS DIQIRRLKRL GIEKTDPTTL TDEEINRFAR LDIDPETITW QRVLDTNDRF
LRKITIGQAP TEKGHTRTAQ FDISVASEIM AVLALTTSLE DMRERLGKMV VASSKKGEPV
SAEDLGVSGA LTVLMKDAIK PNLMQTLEGT PVFVHAGPFA NIAHGNSSII ADQIALKLVG
PEGFVVTEAG FGADIGMEKF FNIKCRYSGL CPHVVVLVAT VRALKMHGGG PTVTAGLPLP
KAYIQENLEL VEKGFSNLKK QIENARMFGI PVVVAVNAFK TDTESELDLI SRLSREHGAF
DAVKCTHWAE GGKGALALAQ AVQRAAQAPS SFQLLYDLKL PVEDKIRIIA QKIYGADDIE
LLPEAQHKAE VYTKQGFGNL PICMAKTHLS LSHNPEQKGV PTGFILPIRD IRASVGAGFL
YPLVGTMSTM PGLPTRPCFY DIDLDPETEQ VNGLF*
speed 1.38 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems