Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 3 transcript(s)...
Querying Taster for transcript #1: ENST00000264012
Querying Taster for transcript #2: ENST00000429102
Querying Taster for transcript #3: ENST00000581171
MT speed 4.9 s - this script 8.006829 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
CDH3disease_causing_automatic0.999999860600049simple_aae0N322Isingle base exchangers121434543show file
CDH3disease_causing_automatic0.999999860600049simple_aae0N322Isingle base exchangers121434543show file
CDH3disease_causing_automatic0.999999860600049simple_aae0N267Isingle base exchangers121434543show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999860600049 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM051019)
  • known disease mutation: rs17640 (pathogenic)
  • protein features (might be) affected
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr16:68714968A>TN/A show variant in all transcripts   IGV
HGNC symbol CDH3
Ensembl transcript ID ENST00000264012
Genbank transcript ID NM_001793
UniProt peptide P22223
alteration type single base exchange
alteration region CDS
DNA changes c.965A>T
cDNA.1509A>T
g.44877A>T
AA changes N322I Score: 149 explain score(s)
position(s) of altered AA
if AA alteration in CDS
322
frameshift no
known variant Reference ID: rs121434543
Allele 'T' was neither found in ExAC nor 1000G.
known disease mutation: rs17640 (pathogenic for EEM syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)

known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.9451
3.9451
(flanking)0.2751
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased44879wt: 0.2055 / mu: 0.2096 (marginal change - not scored)wt: CCAATGACAATGCTC
mu: CCATTGACAATGCTC
 AATG|acaa
distance from splice site 32
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      322TAVAVVEILDANDNAPMFDPQKYE
mutated  not conserved    322TAVAVVEILDAIDNAPMFDPQKY
Ptroglodytes  all identical  ENSPTRG00000008269  322TAVAVVEILDANDNAPVFDPQKY
Mmulatta  all identical  ENSMMUG00000010393  270TAVAVVEILDANDNAPVFDPQKY
Fcatus  all identical  ENSFCAG00000001062  261TAVAIVEILDANDNAPVFDPQKY
Mmusculus  all identical  ENSMUSG00000061048  314TAEAVVQILDANDNAPEFEPQKY
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000002439  256VAKVILTVTDSNDNAPAFTQSSY
Drerio  all identical  ENSDARG00000024371  355TGTAVITVTDSNDNAPLFEQSSY
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  all identical  ENSXETG00000025992  371EGKAIIEITDANDNAPI
protein features
start (aa)end (aa)featuredetails 
108654TOPO_DOMExtracellular (Potential).lost
216328DOMAINCadherin 2.lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2490 / 2490
position (AA) of stopcodon in wt / mu AA sequence 830 / 830
position of stopcodon in wt / mu cDNA 3034 / 3034
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 545 / 545
chromosome 16
strand 1
last intron/exon boundary 2825
theoretical NMD boundary in CDS 2230
length of CDS 2490
coding sequence (CDS) position 965
cDNA position
(for ins/del: last normal base / first normal base)
1509
gDNA position
(for ins/del: last normal base / first normal base)
44877
chromosomal position
(for ins/del: last normal base / first normal base)
68714968
original gDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered gDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
original cDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered cDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
wildtype AA sequence MGLPRGPLAS LLLLQVCWLQ CAASEPCRAV FREAEVTLEA GGAEQEPGQA LGKVFMGCPG
QEPALFSTDN DDFTVRNGET VQERRSLKER NPLKIFPSKR ILRRHKRDWV VAPISVPENG
KGPFPQRLNQ LKSNKDRDTK IFYSITGPGA DSPPEGVFAV EKETGWLLLN KPLDREEIAK
YELFGHAVSE NGASVEDPMN ISIIVTDQND HKPKFTQDTF RGSVLEGVLP GTSVMQVTAT
DEDDAIYTYN GVVAYSIHSQ EPKDPHDLMF TIHRSTGTIS VISSGLDREK VPEYTLTIQA
TDMDGDGSTT TAVAVVEILD ANDNAPMFDP QKYEAHVPEN AVGHEVQRLT VTDLDAPNSP
AWRATYLIMG GDDGDHFTIT THPESNQGIL TTRKGLDFEA KNQHTLYVEV TNEAPFVLKL
PTSTATIVVH VEDVNEAPVF VPPSKVVEVQ EGIPTGEPVC VYTAEDPDKE NQKISYRILR
DPAGWLAMDP DSGQVTAVGT LDREDEQFVR NNIYEVMVLA MDNGSPPTTG TGTLLLTLID
VNDHGPVPEP RQITICNQSP VRQVLNITDK DLSPHTSPFQ AQLTDDSDIY WTAEVNEEGD
TVVLSLKKFL KQDTYDVHLS LSDHGNKEQL TVIRATVCDC HGHVETCPGP WKGGFILPVL
GAVLALLFLL LVLLLLVRKK RKIKEPLLLP EDDTRDNVFY YGEEGGGEED QDYDITQLHR
GLEARPEVVL RNDVAPTIIP TPMYRPRPAN PDEIGNFIIE NLKAANTDPT APPYDTLLVF
DYEGSGSDAA SLSSLTSSAS DQDQDYDYLN EWGSRFKKLA DMYGGGEDD*
mutated AA sequence MGLPRGPLAS LLLLQVCWLQ CAASEPCRAV FREAEVTLEA GGAEQEPGQA LGKVFMGCPG
QEPALFSTDN DDFTVRNGET VQERRSLKER NPLKIFPSKR ILRRHKRDWV VAPISVPENG
KGPFPQRLNQ LKSNKDRDTK IFYSITGPGA DSPPEGVFAV EKETGWLLLN KPLDREEIAK
YELFGHAVSE NGASVEDPMN ISIIVTDQND HKPKFTQDTF RGSVLEGVLP GTSVMQVTAT
DEDDAIYTYN GVVAYSIHSQ EPKDPHDLMF TIHRSTGTIS VISSGLDREK VPEYTLTIQA
TDMDGDGSTT TAVAVVEILD AIDNAPMFDP QKYEAHVPEN AVGHEVQRLT VTDLDAPNSP
AWRATYLIMG GDDGDHFTIT THPESNQGIL TTRKGLDFEA KNQHTLYVEV TNEAPFVLKL
PTSTATIVVH VEDVNEAPVF VPPSKVVEVQ EGIPTGEPVC VYTAEDPDKE NQKISYRILR
DPAGWLAMDP DSGQVTAVGT LDREDEQFVR NNIYEVMVLA MDNGSPPTTG TGTLLLTLID
VNDHGPVPEP RQITICNQSP VRQVLNITDK DLSPHTSPFQ AQLTDDSDIY WTAEVNEEGD
TVVLSLKKFL KQDTYDVHLS LSDHGNKEQL TVIRATVCDC HGHVETCPGP WKGGFILPVL
GAVLALLFLL LVLLLLVRKK RKIKEPLLLP EDDTRDNVFY YGEEGGGEED QDYDITQLHR
GLEARPEVVL RNDVAPTIIP TPMYRPRPAN PDEIGNFIIE NLKAANTDPT APPYDTLLVF
DYEGSGSDAA SLSSLTSSAS DQDQDYDYLN EWGSRFKKLA DMYGGGEDD*
speed 1.57 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999860600049 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM051019)
  • known disease mutation: rs17640 (pathogenic)
  • protein features (might be) affected
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr16:68714968A>TN/A show variant in all transcripts   IGV
HGNC symbol CDH3
Ensembl transcript ID ENST00000429102
Genbank transcript ID N/A
UniProt peptide P22223
alteration type single base exchange
alteration region CDS
DNA changes c.965A>T
cDNA.1352A>T
g.44877A>T
AA changes N322I Score: 149 explain score(s)
position(s) of altered AA
if AA alteration in CDS
322
frameshift no
known variant Reference ID: rs121434543
Allele 'T' was neither found in ExAC nor 1000G.
known disease mutation: rs17640 (pathogenic for EEM syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)

known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.9451
3.9451
(flanking)0.2751
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased44879wt: 0.2055 / mu: 0.2096 (marginal change - not scored)wt: CCAATGACAATGCTC
mu: CCATTGACAATGCTC
 AATG|acaa
distance from splice site 32
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      322TAVAVVEILDANDNAPMFDPQKYE
mutated  not conserved    322TAVAVVEILDAIDNAPMFDPQKY
Ptroglodytes  all identical  ENSPTRG00000008269  322TAVAVVEILDANDNAPVFDPQKY
Mmulatta  all identical  ENSMMUG00000010393  270TAVAVVEILDANDNAPVFDPQKY
Fcatus  all identical  ENSFCAG00000001062  261TAVAIVEILDANDNAPVFDPQKY
Mmusculus  all identical  ENSMUSG00000061048  314TAEAVVQILDANDNAPEFEPQKY
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000002439  256VAKVILTVTDSNDNAPAFTQSSY
Drerio  all identical  ENSDARG00000024371  355TGTAVITVTDSNDNAPLFEQSSY
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  all identical  ENSXETG00000025992  371EGKAIIEITDANDNAPI
protein features
start (aa)end (aa)featuredetails 
108654TOPO_DOMExtracellular (Potential).lost
216328DOMAINCadherin 2.lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2355 / 2355
position (AA) of stopcodon in wt / mu AA sequence 785 / 785
position of stopcodon in wt / mu cDNA 2742 / 2742
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 388 / 388
chromosome 16
strand 1
last intron/exon boundary 2668
theoretical NMD boundary in CDS 2230
length of CDS 2355
coding sequence (CDS) position 965
cDNA position
(for ins/del: last normal base / first normal base)
1352
gDNA position
(for ins/del: last normal base / first normal base)
44877
chromosomal position
(for ins/del: last normal base / first normal base)
68714968
original gDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered gDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
original cDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered cDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
wildtype AA sequence MGLPRGPLAS LLLLQVCWLQ CAASEPCRAV FREAEVTLEA GGAEQEPGQA LGKVFMGCPG
QEPALFSTDN DDFTVRNGET VQERRSLKER NPLKIFPSKR ILRRHKRDWV VAPISVPENG
KGPFPQRLNQ LKSNKDRDTK IFYSITGPGA DSPPEGVFAV EKETGWLLLN KPLDREEIAK
YELFGHAVSE NGASVEDPMN ISIIVTDQND HKPKFTQDTF RGSVLEGVLP GTSVMQVTAT
DEDDAIYTYN GVVAYSIHSQ EPKDPHDLMF TIHRSTGTIS VISSGLDREK VPEYTLTIQA
TDMDGDGSTT TAVAVVEILD ANDNAPMFDP QKYEAHVPEN AVGHEVQRLT VTDLDAPNSP
AWRATYLIMG GDDGDHFTIT THPESNQGIL TTRKGLDFEA KNQHTLYVEV TNEAPFVLKL
PTSTATIVVH VEDVNEAPVF VPPSKVVEVQ EGIPTGEPVC VYTAEDPDKE NQKISYRILR
DPAGWLAMDP DSGQVTAVGT LDREDEQFVR NNIYEVMVLA MDNGSPPTTG TGTLLLTLID
VNDHGPVPEP RQITICNQSP VRQVLNITDK DLSPHTSPFQ AQLTDDSDIY WTAEVNEEGD
TVVLSLKKFL KQDTYDVHLS LSDHGNKEQL TVIRATVCDC HGHVETCPGP WKGGFILPVL
GAVLALLFLL LVLLLLVRKK RKIKEPLLLP EDDTRDNVFY YGEEGGGEED QDYDITQLHR
GLEARPEVVL RNDVAPTIIP TPMYRPRPAN PDEIGNFIIE GRGERGSQRG NGGLQLARGR
TRRS*
mutated AA sequence MGLPRGPLAS LLLLQVCWLQ CAASEPCRAV FREAEVTLEA GGAEQEPGQA LGKVFMGCPG
QEPALFSTDN DDFTVRNGET VQERRSLKER NPLKIFPSKR ILRRHKRDWV VAPISVPENG
KGPFPQRLNQ LKSNKDRDTK IFYSITGPGA DSPPEGVFAV EKETGWLLLN KPLDREEIAK
YELFGHAVSE NGASVEDPMN ISIIVTDQND HKPKFTQDTF RGSVLEGVLP GTSVMQVTAT
DEDDAIYTYN GVVAYSIHSQ EPKDPHDLMF TIHRSTGTIS VISSGLDREK VPEYTLTIQA
TDMDGDGSTT TAVAVVEILD AIDNAPMFDP QKYEAHVPEN AVGHEVQRLT VTDLDAPNSP
AWRATYLIMG GDDGDHFTIT THPESNQGIL TTRKGLDFEA KNQHTLYVEV TNEAPFVLKL
PTSTATIVVH VEDVNEAPVF VPPSKVVEVQ EGIPTGEPVC VYTAEDPDKE NQKISYRILR
DPAGWLAMDP DSGQVTAVGT LDREDEQFVR NNIYEVMVLA MDNGSPPTTG TGTLLLTLID
VNDHGPVPEP RQITICNQSP VRQVLNITDK DLSPHTSPFQ AQLTDDSDIY WTAEVNEEGD
TVVLSLKKFL KQDTYDVHLS LSDHGNKEQL TVIRATVCDC HGHVETCPGP WKGGFILPVL
GAVLALLFLL LVLLLLVRKK RKIKEPLLLP EDDTRDNVFY YGEEGGGEED QDYDITQLHR
GLEARPEVVL RNDVAPTIIP TPMYRPRPAN PDEIGNFIIE GRGERGSQRG NGGLQLARGR
TRRS*
speed 1.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999860600049 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM051019)
  • known disease mutation: rs17640 (pathogenic)
  • protein features (might be) affected
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr16:68714968A>TN/A show variant in all transcripts   IGV
HGNC symbol CDH3
Ensembl transcript ID ENST00000581171
Genbank transcript ID N/A
UniProt peptide P22223
alteration type single base exchange
alteration region CDS
DNA changes c.800A>T
cDNA.929A>T
g.44877A>T
AA changes N267I Score: 149 explain score(s)
position(s) of altered AA
if AA alteration in CDS
267
frameshift no
known variant Reference ID: rs121434543
Allele 'T' was neither found in ExAC nor 1000G.
known disease mutation: rs17640 (pathogenic for EEM syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)

known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
known disease mutation at this position, please check HGMD for details (HGMD ID CM051019)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.9451
3.9451
(flanking)0.2751
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased44879wt: 0.2055 / mu: 0.2096 (marginal change - not scored)wt: CCAATGACAATGCTC
mu: CCATTGACAATGCTC
 AATG|acaa
distance from splice site 32
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      267TAVAVVEILDANDNAPMFDPQKYE
mutated  not conserved    267TAVAVVEILDAIDNAPMFDPQKY
Ptroglodytes  all identical  ENSPTRG00000008269  322TAVAVVEILDANDNAPVFDPQKY
Mmulatta  all identical  ENSMMUG00000010393  270TAVAVVEILDANDNAPVFDPQKY
Fcatus  all identical  ENSFCAG00000001062  261TAVAIVEILDANDNAPVFDPQKY
Mmusculus  all identical  ENSMUSG00000061048  314TAEAVVQILDANDNAPEFEPQKY
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000002439  256VAKVILTVTDSNDNAPAFTQSSY
Drerio  all identical  ENSDARG00000024371  355TGTAVITVTDSNDNAPLFEQSSY
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  all identical  ENSXETG00000025992  371IIEITDANDNAPIFDPKTY
protein features
start (aa)end (aa)featuredetails 
108654TOPO_DOMExtracellular (Potential).lost
216328DOMAINCadherin 2.lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2325 / 2325
position (AA) of stopcodon in wt / mu AA sequence 775 / 775
position of stopcodon in wt / mu cDNA 2454 / 2454
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 130 / 130
chromosome 16
strand 1
last intron/exon boundary 2245
theoretical NMD boundary in CDS 2065
length of CDS 2325
coding sequence (CDS) position 800
cDNA position
(for ins/del: last normal base / first normal base)
929
gDNA position
(for ins/del: last normal base / first normal base)
44877
chromosomal position
(for ins/del: last normal base / first normal base)
68714968
original gDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered gDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
original cDNA sequence snippet AGTGGAGATCCTTGATGCCAATGACAATGCTCCCATGTTTG
altered cDNA sequence snippet AGTGGAGATCCTTGATGCCATTGACAATGCTCCCATGTTTG
wildtype AA sequence MGCPGQEPAL FSTDNDDFTV RNGETVQERR SLKERNPLKI FPSKRILRRH KRDWVVAPIS
VPENGKGPFP QRLNQLKSNK DRDTKIFYSI TGPGADSPPE GVFAVEKETG WLLLNKPLDR
EEIAKYELFG HAVSENGASV EDPMNISIIV TDQNDHKPKF TQDTFRGSVL EGVLPGTSVM
QVTATDEDDA IYTYNGVVAY SIHSQEPKDP HDLMFTIHRS TGTISVISSG LDREKVPEYT
LTIQATDMDG DGSTTTAVAV VEILDANDNA PMFDPQKYEA HVPENAVGHE VQRLTVTDLD
APNSPAWRAT YLIMGGDDGD HFTITTHPES NQGILTTRKG LDFEAKNQHT LYVEVTNEAP
FVLKLPTSTA TIVVHVEDVN EAPVFVPPSK VVEVQEGIPT GEPVCVYTAE DPDKENQKIS
YRILRDPAGW LAMDPDSGQV TAVGTLDRED EQFVRNNIYE VMVLAMDNGS PPTTGTGTLL
LTLIDVNDHG PVPEPRQITI CNQSPVRQVL NITDKDLSPH TSPFQAQLTD DSDIYWTAEV
NEEGDTVVLS LKKFLKQDTY DVHLSLSDHG NKEQLTVIRA TVCDCHGHVE TCPGPWKGGF
ILPVLGAVLA LLFLLLVLLL LVRKKRKIKE PLLLPEDDTR DNVFYYGEEG GGEEDQDYDI
TQLHRGLEAR PEVVLRNDVA PTIIPTPMYR PRPANPDEIG NFIIENLKAA NTDPTAPPYD
TLLVFDYEGS GSDAASLSSL TSSASDQDQD YDYLNEWGSR FKKLADMYGG GEDD*
mutated AA sequence MGCPGQEPAL FSTDNDDFTV RNGETVQERR SLKERNPLKI FPSKRILRRH KRDWVVAPIS
VPENGKGPFP QRLNQLKSNK DRDTKIFYSI TGPGADSPPE GVFAVEKETG WLLLNKPLDR
EEIAKYELFG HAVSENGASV EDPMNISIIV TDQNDHKPKF TQDTFRGSVL EGVLPGTSVM
QVTATDEDDA IYTYNGVVAY SIHSQEPKDP HDLMFTIHRS TGTISVISSG LDREKVPEYT
LTIQATDMDG DGSTTTAVAV VEILDAIDNA PMFDPQKYEA HVPENAVGHE VQRLTVTDLD
APNSPAWRAT YLIMGGDDGD HFTITTHPES NQGILTTRKG LDFEAKNQHT LYVEVTNEAP
FVLKLPTSTA TIVVHVEDVN EAPVFVPPSK VVEVQEGIPT GEPVCVYTAE DPDKENQKIS
YRILRDPAGW LAMDPDSGQV TAVGTLDRED EQFVRNNIYE VMVLAMDNGS PPTTGTGTLL
LTLIDVNDHG PVPEPRQITI CNQSPVRQVL NITDKDLSPH TSPFQAQLTD DSDIYWTAEV
NEEGDTVVLS LKKFLKQDTY DVHLSLSDHG NKEQLTVIRA TVCDCHGHVE TCPGPWKGGF
ILPVLGAVLA LLFLLLVLLL LVRKKRKIKE PLLLPEDDTR DNVFYYGEEG GGEEDQDYDI
TQLHRGLEAR PEVVLRNDVA PTIIPTPMYR PRPANPDEIG NFIIENLKAA NTDPTAPPYD
TLLVFDYEGS GSDAASLSSL TSSASDQDQD YDYLNEWGSR FKKLADMYGG GEDD*
speed 1.54 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems