Yum, tasty mutations...

MutationTaster - study a chromosomal position

 MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 5 transcript(s)...
Querying Taster for transcript #1: ENST00000293217
Querying Taster for transcript #2: ENST00000301608
Querying Taster for transcript #3: ENST00000539791
Querying Taster for transcript #4: ENST00000537812
Querying Taster for transcript #5: ENST00000538781
MT speed 0 s - this script 5.994286 s

Results

genesymbolpredictionprobabilitymodelprediction
problem		splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
ACOX1disease_causing_automatic0.999999997895639simple_aaeaffected0M278Vsingle base exchangers118204090show file
ACOX1disease_causing_automatic0.999999997895639simple_aaeaffected0M278Vsingle base exchangers118204090show file
ACOX1disease_causing_automatic0.999999997895639simple_aaeaffected0M278Vsingle base exchangers118204090show file
ACOX1disease_causing_automatic0.999999997895639simple_aaeaffected0M240Vsingle base exchangers118204090show file
ACOX1disease_causing_automatic0.999999997895639simple_aaeaffected0M210Vsingle base exchangers118204090show file

Taster files

Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999997895639 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM025383)
  • known disease mutation: rs1499 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr17:73949644T>CN/A show variant in all transcripts   IGV
HGNC symbol ACOX1
Ensembl transcript ID ENST00000293217
Genbank transcript ID NM_004035
UniProt peptide Q15067
alteration type single base exchange
alteration region CDS
DNA changes c.832A>G
cDNA.1122A>G
g.25872A>G
AA changes M278V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 278
frameshift no
known variant Reference ID: rs118204090
Allele 'C' was neither found in ExAC nor 1000G.
known disease mutation: rs1499 (pathogenic for Peroxisomal acyl-CoA oxidase deficiency) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)

known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.9691
4.9691
(flanking)3.2781
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor gained258710.85mu: GGGACCGTGGTGTTT GACC|gtgg
distance from splice site 58
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      278KPLSNKLTYGTMVFVRSFLVGEAA
mutated  all conserved    278KPLSNKLTYGTVVFVRSFLVGEA
Ptroglodytes  all identical  ENSPTRG00000009665  278KPLSNKLTYGTMVFVRSFLVGEA
Mmulatta  all identical  ENSMMUG00000014172  278KPLSNKLTYGTMVFVRSFLVGEA
Fcatus  all identical  ENSFCAG00000005765  279KPVSNKLTYGTMVFVRSFLVGEA
Mmusculus  all identical  ENSMUSG00000020777  278KPLSNKLTYGTMVFVRSFLVGSA
Ggallus  all identical  ENSGALG00000002159  279KPVSDKLTYGTMVFIRSLIVGDS
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000014727  278KPPSDKLTYGTMVFIRSMIVGES
Dmelanogaster  all identical  FBgn0027572  291APKNSVLTYGTMMFVRCALIRDT
Celegans  all identical  F59F4.1  288APAHSKLGYGTMVFVRSIMIKDQ
Xtropicalis  all identical  ENSXETG00000012601  291KPLSDKLTYGTMVFIRSMIVGDS
protein features
start (aa)end (aa)featuredetails 
310310MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
332332CONFLICTF -> L (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
421421ACT_SITEProton acceptor (By similarity).might get lost (downstream of altered splice site)
437437MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
449449CONFLICTC -> R (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
490490CONFLICTR -> L (in Ref. 5; BAF85654).might get lost (downstream of altered splice site)
500500MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
504504MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
531531CONFLICTC -> L (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
534535CONFLICTVV -> GL (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
615615CONFLICTV -> A (in Ref. 3; CAA50574).might get lost (downstream of altered splice site)
643643MOD_RESN6-acetyllysine (By similarity).might get lost (downstream of altered splice site)
649649MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
650650CONFLICTY -> YH (in Ref. 4; AAB30019).might get lost (downstream of altered splice site)
651651MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
658660MOTIFMicrobody targeting signal.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1983 / 1983
position (AA) of stopcodon in wt / mu AA sequence 661 / 661
position of stopcodon in wt / mu cDNA 2273 / 2273
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 291 / 291
chromosome 17
strand -1
last intron/exon boundary 2226
theoretical NMD boundary in CDS 1885
length of CDS 1983
coding sequence (CDS) position 832
cDNA position
(for ins/del: last normal base / first normal base)		 1122
gDNA position
(for ins/del: last normal base / first normal base)		 25872
chromosomal position
(for ins/del: last normal base / first normal base)		 73949644
original gDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered gDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
original cDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered cDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
wildtype AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKN FVHRGRPEPL DLHLGMFLPT LLHQATAEQQ
ERFFMPAWNL EIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTMVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
mutated AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKN FVHRGRPEPL DLHLGMFLPT LLHQATAEQQ
ERFFMPAWNL EIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTVVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
speed 1.26 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999997895639 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM025383)
  • known disease mutation: rs1499 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr17:73949644T>CN/A show variant in all transcripts   IGV
HGNC symbol ACOX1
Ensembl transcript ID ENST00000301608
Genbank transcript ID NM_007292
UniProt peptide Q15067
alteration type single base exchange
alteration region CDS
DNA changes c.832A>G
cDNA.893A>G
g.25872A>G
AA changes M278V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 278
frameshift no
known variant Reference ID: rs118204090
Allele 'C' was neither found in ExAC nor 1000G.
known disease mutation: rs1499 (pathogenic for Peroxisomal acyl-CoA oxidase deficiency) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)

known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.9691
4.9691
(flanking)3.2781
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor gained258710.85mu: GGGACCGTGGTGTTT GACC|gtgg
distance from splice site 58
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      278KPLSNKLTYGTMVFVRSFLVGEAA
mutated  all conserved    278KPLSNKLTYGTVVFVRSFLVGEA
Ptroglodytes  all identical  ENSPTRG00000009665  278KPLSNKLTYGTMVFVRSFLVGEA
Mmulatta  all identical  ENSMMUG00000014172  278KPLSNKLTYGTMVFVRSFLVGEA
Fcatus  all identical  ENSFCAG00000005765  279KPVSNKLTYGTMVFVRSFLVGEA
Mmusculus  all identical  ENSMUSG00000020777  278KPLSNKLTYGTMVFVRSFLVGSA
Ggallus  all identical  ENSGALG00000002159  279KPVSDKLTYGTMVFIRSLIVGDS
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000014727  278KPPSDKLTYGTMVFIRSMIVGES
Dmelanogaster  all identical  FBgn0027572  291APKNSVLTYGTMMFVRCALIRDT
Celegans  all identical  F59F4.1  288APAHSKLGYGTMVFVRSIMIKDQ
Xtropicalis  all identical  ENSXETG00000012601  291KPLSDKLTYGTMVFIRSMIVGDS
protein features
start (aa)end (aa)featuredetails 
310310MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
332332CONFLICTF -> L (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
421421ACT_SITEProton acceptor (By similarity).might get lost (downstream of altered splice site)
437437MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
449449CONFLICTC -> R (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
490490CONFLICTR -> L (in Ref. 5; BAF85654).might get lost (downstream of altered splice site)
500500MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
504504MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
531531CONFLICTC -> L (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
534535CONFLICTVV -> GL (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
615615CONFLICTV -> A (in Ref. 3; CAA50574).might get lost (downstream of altered splice site)
643643MOD_RESN6-acetyllysine (By similarity).might get lost (downstream of altered splice site)
649649MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
650650CONFLICTY -> YH (in Ref. 4; AAB30019).might get lost (downstream of altered splice site)
651651MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
658660MOTIFMicrobody targeting signal.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1983 / 1983
position (AA) of stopcodon in wt / mu AA sequence 661 / 661
position of stopcodon in wt / mu cDNA 2044 / 2044
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 62 / 62
chromosome 17
strand -1
last intron/exon boundary 1997
theoretical NMD boundary in CDS 1885
length of CDS 1983
coding sequence (CDS) position 832
cDNA position
(for ins/del: last normal base / first normal base)		 893
gDNA position
(for ins/del: last normal base / first normal base)		 25872
chromosomal position
(for ins/del: last normal base / first normal base)		 73949644
original gDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered gDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
original cDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered cDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
wildtype AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKK LHLVNFVEPV GLNYSMFIPT LLNQGTTAQK
EKWLLSSKGL QIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTMVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
mutated AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKK LHLVNFVEPV GLNYSMFIPT LLNQGTTAQK
EKWLLSSKGL QIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTVVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
speed 0.91 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999997895639 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM025383)
  • known disease mutation: rs1499 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr17:73949644T>CN/A show variant in all transcripts   IGV
HGNC symbol ACOX1
Ensembl transcript ID ENST00000539791
Genbank transcript ID N/A
UniProt peptide Q15067
alteration type single base exchange
alteration region CDS
DNA changes c.832A>G
cDNA.887A>G
g.25872A>G
AA changes M278V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 278
frameshift no
known variant Reference ID: rs118204090
Allele 'C' was neither found in ExAC nor 1000G.
known disease mutation: rs1499 (pathogenic for Peroxisomal acyl-CoA oxidase deficiency) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)

known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.9691
4.9691
(flanking)3.2781
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor gained258710.85mu: GGGACCGTGGTGTTT GACC|gtgg
distance from splice site 58
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      278KPLSNKLTYGTMVFVRSFLVGEAA
mutated  all conserved    278KPLSNKLTYGTVVFVRSFLVGEA
Ptroglodytes  all identical  ENSPTRG00000009665  278KPLSNKLTYGTMVFVRSFLVGEA
Mmulatta  all identical  ENSMMUG00000014172  278KPLSNKLTYGTMVFVRSFLVGEA
Fcatus  all identical  ENSFCAG00000005765  279KPVSNKLTYGTMVFVRSFLVGEA
Mmusculus  all identical  ENSMUSG00000020777  278KPLSNKLTYGTMVFVRSFLVGSA
Ggallus  all identical  ENSGALG00000002159  279KPVSDKLTYGTMVFIRSLIVGDS
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000014727  278KPPSDKLTYGTMVFIRSMIVGES
Dmelanogaster  all identical  FBgn0027572  291APKNSVLTYGTMMFVRCALIRDT
Celegans  all identical  F59F4.1  288APAHSKLGYGTMVFVRSIMIKDQ
Xtropicalis  all identical  ENSXETG00000012601  291KPLSDKLTYGTMVFIRSMIVGDS
protein features
start (aa)end (aa)featuredetails 
310310MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
332332CONFLICTF -> L (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
421421ACT_SITEProton acceptor (By similarity).might get lost (downstream of altered splice site)
437437MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
449449CONFLICTC -> R (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
490490CONFLICTR -> L (in Ref. 5; BAF85654).might get lost (downstream of altered splice site)
500500MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
504504MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
531531CONFLICTC -> L (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
534535CONFLICTVV -> GL (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
615615CONFLICTV -> A (in Ref. 3; CAA50574).might get lost (downstream of altered splice site)
643643MOD_RESN6-acetyllysine (By similarity).might get lost (downstream of altered splice site)
649649MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
650650CONFLICTY -> YH (in Ref. 4; AAB30019).might get lost (downstream of altered splice site)
651651MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
658660MOTIFMicrobody targeting signal.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1983 / 1983
position (AA) of stopcodon in wt / mu AA sequence 661 / 661
position of stopcodon in wt / mu cDNA 2038 / 2038
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 56 / 56
chromosome 17
strand -1
last intron/exon boundary 2511
theoretical NMD boundary in CDS 2405
length of CDS 1983
coding sequence (CDS) position 832
cDNA position
(for ins/del: last normal base / first normal base)		 887
gDNA position
(for ins/del: last normal base / first normal base)		 25872
chromosomal position
(for ins/del: last normal base / first normal base)		 73949644
original gDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered gDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
original cDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered cDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
wildtype AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKN FVHRGRPEPL DLHLGMFLPT LLHQATAEQQ
ERFFMPAWNL EIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTMVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
mutated AA sequence MNPDLRRERD SASFNPELLT HILDGSPEKT RRRREIENMI LNDPDFQHED LNFLTRSQRY
EVAVRKSAIM VKKMREFGIA DPDEIMWFKN FVHRGRPEPL DLHLGMFLPT LLHQATAEQQ
ERFFMPAWNL EIIGTYAQTE MGHGTHLRGL ETTATYDPET QEFILNSPTV TSIKWWPGGL
GKTSNHAIVL AQLITKGKCY GLHAFIVPIR EIGTHKPLPG ITVGDIGPKF GYDEIDNGYL
KMDNHRIPRE NMLMKYAQVK PDGTYVKPLS NKLTYGTVVF VRSFLVGEAA RALSKACTIA
IRYSAVRHQS EIKPGEPEPQ ILDFQTQQYK LFPLLATAYA FQFVGAYMKE TYHRINEGIG
QGDLSELPEL HALTAGLKAF TSWTANTGIE ACRMACGGHG YSHCSGLPNI YVNFTPSCTF
EGENTVMMLQ TARFLMKSYD QVHSGKLVCG MVSYLNDLPS QRIQPQQVAV WPTMVDINSP
ESLTEAYKLR AARLVEIAAK NLQKEVIHRK SKEVAWNLTS VDLVRASEAH CHYVVVKLFS
EKLLKIQDKA IQAVLRSLCL LYSLYGISQN AGDFLQGSIM TEPQITQVNQ RVKELLTLIR
SDAVALVDAF DFQDVTLGSV LGRYDGNVYE NLFEWAKNSP LNKAEVHESY KHLKSLQSKL
*
speed 1.27 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999997895639 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM025383)
  • known disease mutation: rs1499 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr17:73949644T>CN/A show variant in all transcripts   IGV
HGNC symbol ACOX1
Ensembl transcript ID ENST00000537812
Genbank transcript ID NM_001185039
UniProt peptide Q15067
alteration type single base exchange
alteration region CDS
DNA changes c.718A>G
cDNA.1367A>G
g.25872A>G
AA changes M240V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 240
frameshift no
known variant Reference ID: rs118204090
Allele 'C' was neither found in ExAC nor 1000G.
known disease mutation: rs1499 (pathogenic for Peroxisomal acyl-CoA oxidase deficiency) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)

known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.9691
4.9691
(flanking)3.2781
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor gained258710.85mu: GGGACCGTGGTGTTT GACC|gtgg
distance from splice site 58
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      240KPLSNKLTYGTMVFVRSFLVGEAA
mutated  all conserved    240KPLSNKLTYGTVVFVRSFLVGEA
Ptroglodytes  all identical  ENSPTRG00000009665  278KPLSNKLTYGTMVFVRSFLVGEA
Mmulatta  all identical  ENSMMUG00000014172  278KPLSNKLTYGTMVFVRSFLVGEA
Fcatus  all identical  ENSFCAG00000005765  279MVFVRSFLVGEA
Mmusculus  all identical  ENSMUSG00000020777  278KPLSNKLTYGTMVFVRSFLVGSA
Ggallus  all identical  ENSGALG00000002159  279KPVSDKLTYGTMVFIRSLIVGDS
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000014727  278KPPSDKLTYGTMVFIRSMIVGES
Dmelanogaster  all identical  FBgn0027572  291SVLTYGTMMFVRCALIRDT
Celegans  all identical  F59F4.1  288APAHSKLGYGTMVFVRSIMIKDQ
Xtropicalis  all identical  ENSXETG00000012601  291KPLSDKLTYGTMVFIRSMIVGDS
protein features
start (aa)end (aa)featuredetails 
255255MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
264264CONFLICTT -> P (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
267267MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
310310MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
332332CONFLICTF -> L (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
421421ACT_SITEProton acceptor (By similarity).might get lost (downstream of altered splice site)
437437MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
449449CONFLICTC -> R (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
490490CONFLICTR -> L (in Ref. 5; BAF85654).might get lost (downstream of altered splice site)
500500MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
504504MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
531531CONFLICTC -> L (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
534535CONFLICTVV -> GL (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
615615CONFLICTV -> A (in Ref. 3; CAA50574).might get lost (downstream of altered splice site)
643643MOD_RESN6-acetyllysine (By similarity).might get lost (downstream of altered splice site)
649649MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
650650CONFLICTY -> YH (in Ref. 4; AAB30019).might get lost (downstream of altered splice site)
651651MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
658660MOTIFMicrobody targeting signal.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1869 / 1869
position (AA) of stopcodon in wt / mu AA sequence 623 / 623
position of stopcodon in wt / mu cDNA 2518 / 2518
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 650 / 650
chromosome 17
strand -1
last intron/exon boundary 2471
theoretical NMD boundary in CDS 1771
length of CDS 1869
coding sequence (CDS) position 718
cDNA position
(for ins/del: last normal base / first normal base)		 1367
gDNA position
(for ins/del: last normal base / first normal base)		 25872
chromosomal position
(for ins/del: last normal base / first normal base)		 73949644
original gDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered gDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
original cDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered cDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
wildtype AA sequence MILNDPDFQH EDLNFLTRSQ RYEVAVRKSA IMVKKMREFG IADPDEIMWF KNFVHRGRPE
PLDLHLGMFL PTLLHQATAE QQERFFMPAW NLEIIGTYAQ TEMGHGTHLR GLETTATYDP
ETQEFILNSP TVTSIKWWPG GLGKTSNHAI VLAQLITKGK CYGLHAFIVP IREIGTHKPL
PGITVGDIGP KFGYDEIDNG YLKMDNHRIP RENMLMKYAQ VKPDGTYVKP LSNKLTYGTM
VFVRSFLVGE AARALSKACT IAIRYSAVRH QSEIKPGEPE PQILDFQTQQ YKLFPLLATA
YAFQFVGAYM KETYHRINEG IGQGDLSELP ELHALTAGLK AFTSWTANTG IEACRMACGG
HGYSHCSGLP NIYVNFTPSC TFEGENTVMM LQTARFLMKS YDQVHSGKLV CGMVSYLNDL
PSQRIQPQQV AVWPTMVDIN SPESLTEAYK LRAARLVEIA AKNLQKEVIH RKSKEVAWNL
TSVDLVRASE AHCHYVVVKL FSEKLLKIQD KAIQAVLRSL CLLYSLYGIS QNAGDFLQGS
IMTEPQITQV NQRVKELLTL IRSDAVALVD AFDFQDVTLG SVLGRYDGNV YENLFEWAKN
SPLNKAEVHE SYKHLKSLQS KL*
mutated AA sequence MILNDPDFQH EDLNFLTRSQ RYEVAVRKSA IMVKKMREFG IADPDEIMWF KNFVHRGRPE
PLDLHLGMFL PTLLHQATAE QQERFFMPAW NLEIIGTYAQ TEMGHGTHLR GLETTATYDP
ETQEFILNSP TVTSIKWWPG GLGKTSNHAI VLAQLITKGK CYGLHAFIVP IREIGTHKPL
PGITVGDIGP KFGYDEIDNG YLKMDNHRIP RENMLMKYAQ VKPDGTYVKP LSNKLTYGTV
VFVRSFLVGE AARALSKACT IAIRYSAVRH QSEIKPGEPE PQILDFQTQQ YKLFPLLATA
YAFQFVGAYM KETYHRINEG IGQGDLSELP ELHALTAGLK AFTSWTANTG IEACRMACGG
HGYSHCSGLP NIYVNFTPSC TFEGENTVMM LQTARFLMKS YDQVHSGKLV CGMVSYLNDL
PSQRIQPQQV AVWPTMVDIN SPESLTEAYK LRAARLVEIA AKNLQKEVIH RKSKEVAWNL
TSVDLVRASE AHCHYVVVKL FSEKLLKIQD KAIQAVLRSL CLLYSLYGIS QNAGDFLQGS
IMTEPQITQV NQRVKELLTL IRSDAVALVD AFDFQDVTLG SVLGRYDGNV YENLFEWAKN
SPLNKAEVHE SYKHLKSLQS KL*
speed 1.41 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999997895639 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM025383)
  • known disease mutation: rs1499 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr17:73949644T>CN/A show variant in all transcripts   IGV
HGNC symbol ACOX1
Ensembl transcript ID ENST00000538781
Genbank transcript ID N/A
UniProt peptide Q15067
alteration type single base exchange
alteration region CDS
DNA changes c.628A>G
cDNA.1048A>G
g.25872A>G
AA changes M210V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 210
frameshift no
known variant Reference ID: rs118204090
Allele 'C' was neither found in ExAC nor 1000G.
known disease mutation: rs1499 (pathogenic for Peroxisomal acyl-CoA oxidase deficiency) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)

known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
known disease mutation at this position, please check HGMD for details (HGMD ID CM025383)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)4.9691
4.9691
(flanking)3.2781
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor gained258710.85mu: GGGACCGTGGTGTTT GACC|gtgg
distance from splice site 58
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      210KPLSNKLTYGTMVFVRSFLVGEAA
mutated  all conserved    210KPLSNKLTYGTVVFVRSFLVGEA
Ptroglodytes  all identical  ENSPTRG00000009665  278NKLTYGTMVFVRSFLVGEA
Mmulatta  all identical  ENSMMUG00000014172  278MVFVRSFLVGEA
Fcatus  all identical  ENSFCAG00000005765  279NKLTYGTMVFVRSFLVGEA
Mmusculus  all identical  ENSMUSG00000020777  278KLTYGTMVFVRSFLVGSA
Ggallus  all identical  ENSGALG00000002159  279DKLTYGTMVFIRSLIVGDS
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000014727  278KLTYGTMVFIRSMIVGES
Dmelanogaster  all identical  FBgn0027572  291APKNSVLTYGTMMFVRCALIRDT
Celegans  all identical  F59F4.1  288APAHSKLGYGTMVFVRSIMIKDQ
Xtropicalis  all identical  ENSXETG00000012601  291MVFIRSMIVGDS
protein features
start (aa)end (aa)featuredetails 
212213CONFLICTIG -> NR (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
255255MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
264264CONFLICTT -> P (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
267267MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
310310MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
332332CONFLICTF -> L (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
421421ACT_SITEProton acceptor (By similarity).might get lost (downstream of altered splice site)
437437MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
449449CONFLICTC -> R (in Ref. 2; AAA18595).might get lost (downstream of altered splice site)
490490CONFLICTR -> L (in Ref. 5; BAF85654).might get lost (downstream of altered splice site)
500500MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
504504MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
531531CONFLICTC -> L (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
534535CONFLICTVV -> GL (in Ref. 1; AAA19113/AAA19114 and 2; AAA18595).might get lost (downstream of altered splice site)
615615CONFLICTV -> A (in Ref. 3; CAA50574).might get lost (downstream of altered splice site)
643643MOD_RESN6-acetyllysine (By similarity).might get lost (downstream of altered splice site)
649649MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
650650CONFLICTY -> YH (in Ref. 4; AAB30019).might get lost (downstream of altered splice site)
651651MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
658660MOTIFMicrobody targeting signal.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1779 / 1779
position (AA) of stopcodon in wt / mu AA sequence 593 / 593
position of stopcodon in wt / mu cDNA 2199 / 2199
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 421 / 421
chromosome 17
strand -1
last intron/exon boundary 2152
theoretical NMD boundary in CDS 1681
length of CDS 1779
coding sequence (CDS) position 628
cDNA position
(for ins/del: last normal base / first normal base)		 1048
gDNA position
(for ins/del: last normal base / first normal base)		 25872
chromosomal position
(for ins/del: last normal base / first normal base)		 73949644
original gDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered gDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
original cDNA sequence snippet ACAAGCTGACTTACGGGACCATGGTGTTTGTCAGGTCCTTC
altered cDNA sequence snippet ACAAGCTGACTTACGGGACCGTGGTGTTTGTCAGGTCCTTC
wildtype AA sequence MAAFIQRTPD NWHLRPDGNG PRFVHRGRPE PLDLHLGMFL PTLLHQATAE QQERFFMPAW
NLEIIGTYAQ TEMGHGTHLR GLETTATYDP ETQEFILNSP TVTSIKWWPG GLGKTSNHAI
VLAQLITKGK CYGLHAFIVP IREIGTHKPL PGITVGDIGP KFGYDEIDNG YLKMDNHRIP
RENMLMKYAQ VKPDGTYVKP LSNKLTYGTM VFVRSFLVGE AARALSKACT IAIRYSAVRH
QSEIKPGEPE PQILDFQTQQ YKLFPLLATA YAFQFVGAYM KETYHRINEG IGQGDLSELP
ELHALTAGLK AFTSWTANTG IEACRMACGG HGYSHCSGLP NIYVNFTPSC TFEGENTVMM
LQTARFLMKS YDQVHSGKLV CGMVSYLNDL PSQRIQPQQV AVWPTMVDIN SPESLTEAYK
LRAARLVEIA AKNLQKEVIH RKSKEVAWNL TSVDLVRASE AHCHYVVVKL FSEKLLKIQD
KAIQAVLRSL CLLYSLYGIS QNAGDFLQGS IMTEPQITQV NQRVKELLTL IRSDAVALVD
AFDFQDVTLG SVLGRYDGNV YENLFEWAKN SPLNKAEVHE SYKHLKSLQS KL*
mutated AA sequence MAAFIQRTPD NWHLRPDGNG PRFVHRGRPE PLDLHLGMFL PTLLHQATAE QQERFFMPAW
NLEIIGTYAQ TEMGHGTHLR GLETTATYDP ETQEFILNSP TVTSIKWWPG GLGKTSNHAI
VLAQLITKGK CYGLHAFIVP IREIGTHKPL PGITVGDIGP KFGYDEIDNG YLKMDNHRIP
RENMLMKYAQ VKPDGTYVKP LSNKLTYGTV VFVRSFLVGE AARALSKACT IAIRYSAVRH
QSEIKPGEPE PQILDFQTQQ YKLFPLLATA YAFQFVGAYM KETYHRINEG IGQGDLSELP
ELHALTAGLK AFTSWTANTG IEACRMACGG HGYSHCSGLP NIYVNFTPSC TFEGENTVMM
LQTARFLMKS YDQVHSGKLV CGMVSYLNDL PSQRIQPQQV AVWPTMVDIN SPESLTEAYK
LRAARLVEIA AKNLQKEVIH RKSKEVAWNL TSVDLVRASE AHCHYVVVKL FSEKLLKIQD
KAIQAVLRSL CLLYSLYGIS QNAGDFLQGS IMTEPQITQV NQRVKELLTL IRSDAVALVD
AFDFQDVTLG SVLGRYDGNV YENLFEWAKN SPLNKAEVHE SYKHLKSLQS KL*
speed 1.04 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

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