Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 8 transcript(s)...
Querying Taster for transcript #1: ENST00000372723
Querying Taster for transcript #2: ENST00000372722
Querying Taster for transcript #3: ENST00000357275
Querying Taster for transcript #4: ENST00000372720
Querying Taster for transcript #5: ENST00000372717
Querying Taster for transcript #6: ENST00000360981
Querying Taster for transcript #7: ENST00000372712
Querying Taster for transcript #8: ENST00000372710
MT speed 0 s - this script 5.984654 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM94Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM94Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM192Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM94Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM94Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic6.39331150242839e-08simple_aaeaffectedM196Vsingle base exchangers1127497show file
DBNDD2polymorphism_automatic0.999999999738211without_aaeaffectedsingle base exchangers1127497show file
DBNDD2polymorphism_automatic0.999999999738211without_aaeaffectedsingle base exchangers1127497show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372723
Genbank transcript ID NM_001048221
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.280A>G
cDNA.442A>G
g.3878A>G
AA changes M94V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
94
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      94EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    94EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
162162CONFLICTQ -> H (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
192192CONFLICTM -> V (in Ref. 1; AAF67656, 2; BAA91235 and 5; AAH12818/AAH01105).might get lost (downstream of altered splice site)
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 486 / 486
position (AA) of stopcodon in wt / mu AA sequence 162 / 162
position of stopcodon in wt / mu cDNA 648 / 648
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 163 / 163
chromosome 20
strand 1
last intron/exon boundary 440
theoretical NMD boundary in CDS 227
length of CDS 486
coding sequence (CDS) position 280
cDNA position
(for ins/del: last normal base / first normal base)
442
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
mutated AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGVDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
speed 0.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000357275
Genbank transcript ID NM_001197140
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.280A>G
cDNA.360A>G
g.3878A>G
AA changes M94V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
94
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      94EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    94EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
162162CONFLICTQ -> H (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
192192CONFLICTM -> V (in Ref. 1; AAF67656, 2; BAA91235 and 5; AAH12818/AAH01105).might get lost (downstream of altered splice site)
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 486 / 486
position (AA) of stopcodon in wt / mu AA sequence 162 / 162
position of stopcodon in wt / mu cDNA 566 / 566
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 81 / 81
chromosome 20
strand 1
last intron/exon boundary 358
theoretical NMD boundary in CDS 227
length of CDS 486
coding sequence (CDS) position 280
cDNA position
(for ins/del: last normal base / first normal base)
360
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
mutated AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGVDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
speed 0.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372720
Genbank transcript ID NM_018478
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.574A>G
cDNA.805A>G
g.3878A>G
AA changes M192V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
192
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      192EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    192EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
192192CONFLICTM -> V (in Ref. 1; AAF67656, 2; BAA91235 and 5; AAH12818/AAH01105).lost
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 780 / 780
position (AA) of stopcodon in wt / mu AA sequence 260 / 260
position of stopcodon in wt / mu cDNA 1011 / 1011
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 232 / 232
chromosome 20
strand 1
last intron/exon boundary 803
theoretical NMD boundary in CDS 521
length of CDS 780
coding sequence (CDS) position 574
cDNA position
(for ins/del: last normal base / first normal base)
805
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MGAGNFLTAL EVPVAALAGA ASDRRASCER VSPPPPLPHF RLPPLPRSRL PGPVSRPEPG
APLLGCWLQW GAPSPGPLCL LFRLCSCTCF APLPAGADMD PNPRAALERQ QLRLRERQKF
FEDILQPETE FVFPLSHLHL ESQRPPIGSI SSMEVNVDTL EQVELIDLGD PDAADVFLPC
EDPPPTPQSS GMDNHLEELS LPVPTSDRTT SRTSSSSSSD SSTNLHSPNP SDDGADTPLA
QSDEEEERGD GGAEPGACS*
mutated AA sequence MGAGNFLTAL EVPVAALAGA ASDRRASCER VSPPPPLPHF RLPPLPRSRL PGPVSRPEPG
APLLGCWLQW GAPSPGPLCL LFRLCSCTCF APLPAGADMD PNPRAALERQ QLRLRERQKF
FEDILQPETE FVFPLSHLHL ESQRPPIGSI SSMEVNVDTL EQVELIDLGD PDAADVFLPC
EDPPPTPQSS GVDNHLEELS LPVPTSDRTT SRTSSSSSSD SSTNLHSPNP SDDGADTPLA
QSDEEEERGD GGAEPGACS*
speed 0.29 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000360981
Genbank transcript ID NM_001048223
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.280A>G
cDNA.402A>G
g.3878A>G
AA changes M94V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
94
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      94EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    94EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
162162CONFLICTQ -> H (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
192192CONFLICTM -> V (in Ref. 1; AAF67656, 2; BAA91235 and 5; AAH12818/AAH01105).might get lost (downstream of altered splice site)
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 486 / 486
position (AA) of stopcodon in wt / mu AA sequence 162 / 162
position of stopcodon in wt / mu cDNA 608 / 608
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 123 / 123
chromosome 20
strand 1
last intron/exon boundary 400
theoretical NMD boundary in CDS 227
length of CDS 486
coding sequence (CDS) position 280
cDNA position
(for ins/del: last normal base / first normal base)
402
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
mutated AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGVDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
speed 0.88 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372712
Genbank transcript ID N/A
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.280A>G
cDNA.861A>G
g.3878A>G
AA changes M94V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
94
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      94EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    94EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
162162CONFLICTQ -> H (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
192192CONFLICTM -> V (in Ref. 1; AAF67656, 2; BAA91235 and 5; AAH12818/AAH01105).might get lost (downstream of altered splice site)
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 486 / 486
position (AA) of stopcodon in wt / mu AA sequence 162 / 162
position of stopcodon in wt / mu cDNA 1067 / 1067
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 582 / 582
chromosome 20
strand 1
last intron/exon boundary 859
theoretical NMD boundary in CDS 227
length of CDS 486
coding sequence (CDS) position 280
cDNA position
(for ins/del: last normal base / first normal base)
861
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
mutated AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGVDNHLEE LSLPVPTSDR TTSRTSSSSS
SDSSTNLHSP NPSDDGADTP LAQSDEEEER GDGGAEPGAC S*
speed 0.78 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999936066885 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372710
Genbank transcript ID NM_001048225
UniProt peptide Q9BQY9
alteration type single base exchange
alteration region CDS
DNA changes c.586A>G
cDNA.741A>G
g.3878A>G
AA changes M196V Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS
196
frameshift no
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      196EDPPPTPQSSGMDNHLEELSLPVP
mutated  all conserved    196EDPPPTPQSSGVDNHLEELSLPV
Ptroglodytes  all conserved  ENSPTRG00000013544  94EDPPPTPQSSGVDNHLEELSLPV
Mmulatta  all conserved  ENSMMUG00000003409  193EDPPPTPQSSGVDNHLEELSLPV
Fcatus  no homologue    
Mmusculus  all conserved  ENSMUSG00000017734  94EESSPAPQMSGVDDHPEELSLLV
Ggallus  not conserved  ENSGALG00000003921  99EEGSVSGPLTGADASQCQEEITLQV
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000074904  112SGEEGSLTSPLPDFGHADLEENGLQRSDLPL
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
204204CONFLICTP -> A (in Ref. 1; AAF67656).might get lost (downstream of altered splice site)
214222COMPBIASPoly-Ser.might get lost (downstream of altered splice site)
215215MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
244247COMPBIASPoly-Glu.might get lost (downstream of altered splice site)
249249CONFLICTG -> D (in Ref. 2; BAA91235).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 792 / 792
position (AA) of stopcodon in wt / mu AA sequence 264 / 264
position of stopcodon in wt / mu cDNA 947 / 947
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 156 / 156
chromosome 20
strand 1
last intron/exon boundary 739
theoretical NMD boundary in CDS 533
length of CDS 792
coding sequence (CDS) position 586
cDNA position
(for ins/del: last normal base / first normal base)
741
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet CAACCCCCCAGTCGTCTGGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet CAACCCCCCAGTCGTCTGGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MESWALAVFP EYRVSLLWCL ELASPLWSLG QAPPLHETWF VGHTWFQGRG KRSPRAEVSR
PEPGAPLLGC WLQWGAPSPG PLCLLFRLCS CTCFAPLPAG ADMDPNPRAA LERQQLRLRE
RQKFFEDILQ PETEFVFPLS HLHLESQRPP IGSISSMEVN VDTLEQVELI DLGDPDAADV
FLPCEDPPPT PQSSGMDNHL EELSLPVPTS DRTTSRTSSS SSSDSSTNLH SPNPSDDGAD
TPLAQSDEEE ERGDGGAEPG ACS*
mutated AA sequence MESWALAVFP EYRVSLLWCL ELASPLWSLG QAPPLHETWF VGHTWFQGRG KRSPRAEVSR
PEPGAPLLGC WLQWGAPSPG PLCLLFRLCS CTCFAPLPAG ADMDPNPRAA LERQQLRLRE
RQKFFEDILQ PETEFVFPLS HLHLESQRPP IGSISSMEVN VDTLEQVELI DLGDPDAADV
FLPCEDPPPT PQSSGVDNHL EELSLPVPTS DRTTSRTSSS SSSDSSTNLH SPNPSDDGAD
TPLAQSDEEE ERGDGGAEPG ACS*
speed 0.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: without_aae, prob: 2.61789142422279e-10 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • homozygous in TGP or ExAC
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372722
Genbank transcript ID NM_001048222
UniProt peptide N/A
alteration type single base exchange
alteration region 3'UTR
DNA changes cDNA.526A>G
g.3878A>G
AA changes N/A
position(s) of altered AA
if AA alteration in CDS
N/A
frameshift N/A
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
splice site change occurs after stopcodon (at aa 125)
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
N/A
protein features N/A
length of protein N/A
AA sequence altered N/A
position of stopcodon in wt / mu CDS N/A
position (AA) of stopcodon in wt / mu AA sequence N/A
position of stopcodon in wt / mu cDNA N/A
poly(A) signal signal is predicted to be ok
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 149 / 149
chromosome 20
strand 1
last intron/exon boundary 524
theoretical NMD boundary in CDS 325
length of CDS 339
coding sequence (CDS) position N/A
cDNA position
(for ins/del: last normal base / first normal base)
526
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet GGCTGGGGAAGTACACAAGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet GGCTGGGGAAGTACACAAGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMPLCFGD FSASQPEPDV RL*
mutated AA sequence N/A
speed 0.82 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: without_aae, prob: 2.61789142422279e-10 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • homozygous in TGP or ExAC
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr20:44038574A>GN/A show variant in all transcripts   IGV
HGNC symbol DBNDD2
Ensembl transcript ID ENST00000372717
Genbank transcript ID NM_001048224
UniProt peptide N/A
alteration type single base exchange
alteration region 3'UTR
DNA changes cDNA.531A>G
g.3878A>G
AA changes N/A
position(s) of altered AA
if AA alteration in CDS
N/A
frameshift N/A
known variant Reference ID: rs1127497
databasehomozygous (G/G)heterozygousallele carriers
1000G15097942303
ExAC648531699654
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.1850.973
0.470.967
(flanking)0.9760.964
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
splice site change occurs after stopcodon (at aa 125)
effectgDNA positionscoredetection sequence  exon-intron border
Acceptor lost3875sequence motif lost- wt: gcag|GGAT
 mu: gcag.GGGT
Acc marginally increased3871wt: 0.9964 / mu: 0.9969 (marginal change - not scored)wt: CTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTT
mu: CTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTT
 ctgg|GCAG
Acc marginally increased3870wt: 0.9835 / mu: 0.9879 (marginal change - not scored)wt: CCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATT
mu: CCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATT
 tctg|GGCA
Acc marginally increased3868wt: 0.2593 / mu: 0.3432 (marginal change - not scored)wt: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGATGGACAACCA
mu: GGCCTGACCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCA
 tctc|TGGG
Acc marginally decreased3875wt: 0.9190 / mu: 0.9181 (marginal change - not scored)wt: CCAGCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAG
mu: CCAGCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAG
 gcag|GGAT
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
N/A
protein features N/A
length of protein N/A
AA sequence altered N/A
position of stopcodon in wt / mu CDS N/A
position (AA) of stopcodon in wt / mu AA sequence N/A
position of stopcodon in wt / mu cDNA N/A
poly(A) signal signal is predicted to be ok
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 154 / 154
chromosome 20
strand 1
last intron/exon boundary 529
theoretical NMD boundary in CDS 325
length of CDS 339
coding sequence (CDS) position N/A
cDNA position
(for ins/del: last normal base / first normal base)
531
gDNA position
(for ins/del: last normal base / first normal base)
3878
chromosomal position
(for ins/del: last normal base / first normal base)
44038574
original gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGATGGACAACCATTTGGAGGAG
altered gDNA sequence snippet GCTTTTCTCTCTGGGCAGGGGTGGACAACCATTTGGAGGAG
original cDNA sequence snippet GGCTGGGGAAGTACACAAGGATGGACAACCATTTGGAGGAG
altered cDNA sequence snippet GGCTGGGGAAGTACACAAGGGTGGACAACCATTTGGAGGAG
wildtype AA sequence MDPNPRAALE RQQLRLRERQ KFFEDILQPE TEFVFPLSHL HLESQRPPIG SISSMEVNVD
TLEQVELIDL GDPDAADVFL PCEDPPPTPQ SSGMPLCFGD FSASQPEPDV RL*
mutated AA sequence N/A
speed 0.85 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems