Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 3 transcript(s)...
Querying Taster for transcript #1: ENST00000296754
Querying Taster for transcript #2: ENST00000443439
Querying Taster for transcript #3: ENST00000414384
MT speed 0 s - this script 4.903142 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
ERAP1polymorphism_automatic0.000186967330195964simple_aaeaffectedQ730Esingle base exchangers27044show file
ERAP1polymorphism_automatic0.000186967330195964simple_aaeaffectedQ730Esingle base exchangers27044show file
ERAP1polymorphism_automatic0.000186967330195964simple_aaeaffectedQ730Esingle base exchangers27044show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999813032669804 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM078286)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:96118852G>CN/A show variant in all transcripts   IGV
HGNC symbol ERAP1
Ensembl transcript ID ENST00000296754
Genbank transcript ID NM_016442
UniProt peptide Q9NZ08
alteration type single base exchange
alteration region CDS
DNA changes c.2188C>G
cDNA.2446C>G
g.24952C>G
AA changes Q730E Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
730
frameshift no
known variant Reference ID: rs27044
databasehomozygous (C/C)heterozygousallele carriers
1000G118710282215
ExAC29447-261273320

known disease mutation at this position, please check HGMD for details (HGMD ID CM078286)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9090.764
0.9340.592
(flanking)-1.4280.161
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased24949wt: 0.9956 / mu: 0.9965 (marginal change - not scored)wt: TGCGGAGTCAACTAC
mu: TGCGGAGTGAACTAC
 CGGA|gtca
Donor gained249460.33mu: TGCTGCGGAGTGAAC CTGC|ggag
distance from splice site 88
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      730EGSVSERMLRSQLLLLACVHNYQP
mutated  all conserved    730SVSERMLRSELLLLACVHNYQ
Ptroglodytes  all identical  ENSPTRG00000017095  730SVSERMLRSQLLLLACVHNYQ
Mmulatta  no homologue    
Fcatus  all conserved  ENSFCAG00000004966  730EGSVSQRMLRSELLLLACMCKYQ
Mmusculus  all identical  ENSMUSG00000021583  719EGSVSERMLRSQLLLLACVRNYQ
Ggallus  not conserved  ENSGALG00000014684  591EGSVSERMLRQSLLMFACVRR
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000021859  744EGSVSERMLRSYLLLFGCVRGHP
Dmelanogaster  all conserved  FBgn0039064  913DGDVATRLLRPEVLLASVLWEDI
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
22941TOPO_DOMLumenal (Potential).lost
722737HELIXlost
736736DISULFIDmight get lost (downstream of altered splice site)
741756HELIXmight get lost (downstream of altered splice site)
743743DISULFIDmight get lost (downstream of altered splice site)
757759TURNmight get lost (downstream of altered splice site)
760760CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
765767HELIXmight get lost (downstream of altered splice site)
768775HELIXmight get lost (downstream of altered splice site)
779791HELIXmight get lost (downstream of altered splice site)
795805HELIXmight get lost (downstream of altered splice site)
811823HELIXmight get lost (downstream of altered splice site)
824827STRANDmight get lost (downstream of altered splice site)
829831HELIXmight get lost (downstream of altered splice site)
832840HELIXmight get lost (downstream of altered splice site)
843845TURNmight get lost (downstream of altered splice site)
846864HELIXmight get lost (downstream of altered splice site)
869877HELIXmight get lost (downstream of altered splice site)
878881TURNmight get lost (downstream of altered splice site)
885896HELIXmight get lost (downstream of altered splice site)
897900TURNmight get lost (downstream of altered splice site)
901901CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
902904TURNmight get lost (downstream of altered splice site)
906941HELIXmight get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2847 / 2847
position (AA) of stopcodon in wt / mu AA sequence 949 / 949
position of stopcodon in wt / mu cDNA 3105 / 3105
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 259 / 259
chromosome 5
strand -1
last intron/exon boundary 3077
theoretical NMD boundary in CDS 2768
length of CDS 2847
coding sequence (CDS) position 2188
cDNA position
(for ins/del: last normal base / first normal base)
2446
gDNA position
(for ins/del: last normal base / first normal base)
24952
chromosomal position
(for ins/del: last normal base / first normal base)
96118852
original gDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered gDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
original cDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered cDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
wildtype AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSQ LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLEH DPEADATG*
mutated AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSE LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLEH DPEADATG*
speed 1.39 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999813032669804 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM078286)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:96118852G>CN/A show variant in all transcripts   IGV
HGNC symbol ERAP1
Ensembl transcript ID ENST00000443439
Genbank transcript ID NM_001040458
UniProt peptide Q9NZ08
alteration type single base exchange
alteration region CDS
DNA changes c.2188C>G
cDNA.2255C>G
g.24952C>G
AA changes Q730E Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
730
frameshift no
known variant Reference ID: rs27044
databasehomozygous (C/C)heterozygousallele carriers
1000G118710282215
ExAC29447-261273320

known disease mutation at this position, please check HGMD for details (HGMD ID CM078286)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9090.764
0.9340.592
(flanking)-1.4280.161
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased24949wt: 0.9956 / mu: 0.9965 (marginal change - not scored)wt: TGCGGAGTCAACTAC
mu: TGCGGAGTGAACTAC
 CGGA|gtca
Donor gained249460.33mu: TGCTGCGGAGTGAAC CTGC|ggag
distance from splice site 88
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      730EGSVSERMLRSQLLLLACVHNYQP
mutated  all conserved    730SVSERMLRSELLLLACVHNYQ
Ptroglodytes  all identical  ENSPTRG00000017095  730SVSERMLRSQLLLLACVHNYQ
Mmulatta  no homologue    
Fcatus  all conserved  ENSFCAG00000004966  730EGSVSQRMLRSELLLLACMCKYQ
Mmusculus  all identical  ENSMUSG00000021583  719EGSVSERMLRSQLLLLACVRNYQ
Ggallus  not conserved  ENSGALG00000014684  591EGSVSERMLRQSLLMFACVRR
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000021859  744EGSVSERMLRSYLLLFGCVRGHP
Dmelanogaster  all conserved  FBgn0039064  913DGDVATRLLRPEVLLASVLWEDI
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
22941TOPO_DOMLumenal (Potential).lost
722737HELIXlost
736736DISULFIDmight get lost (downstream of altered splice site)
741756HELIXmight get lost (downstream of altered splice site)
743743DISULFIDmight get lost (downstream of altered splice site)
757759TURNmight get lost (downstream of altered splice site)
760760CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
765767HELIXmight get lost (downstream of altered splice site)
768775HELIXmight get lost (downstream of altered splice site)
779791HELIXmight get lost (downstream of altered splice site)
795805HELIXmight get lost (downstream of altered splice site)
811823HELIXmight get lost (downstream of altered splice site)
824827STRANDmight get lost (downstream of altered splice site)
829831HELIXmight get lost (downstream of altered splice site)
832840HELIXmight get lost (downstream of altered splice site)
843845TURNmight get lost (downstream of altered splice site)
846864HELIXmight get lost (downstream of altered splice site)
869877HELIXmight get lost (downstream of altered splice site)
878881TURNmight get lost (downstream of altered splice site)
885896HELIXmight get lost (downstream of altered splice site)
897900TURNmight get lost (downstream of altered splice site)
901901CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
902904TURNmight get lost (downstream of altered splice site)
906941HELIXmight get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2826 / 2826
position (AA) of stopcodon in wt / mu AA sequence 942 / 942
position of stopcodon in wt / mu cDNA 2893 / 2893
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 68 / 68
chromosome 5
strand -1
last intron/exon boundary 2738
theoretical NMD boundary in CDS 2620
length of CDS 2826
coding sequence (CDS) position 2188
cDNA position
(for ins/del: last normal base / first normal base)
2255
gDNA position
(for ins/del: last normal base / first normal base)
24952
chromosomal position
(for ins/del: last normal base / first normal base)
96118852
original gDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered gDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
original cDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered cDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
wildtype AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSQ LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLER M*
mutated AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSE LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLER M*
speed 1.51 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999813032669804 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • known disease mutation at this position (HGMD CM078286)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:96118852G>CN/A show variant in all transcripts   IGV
HGNC symbol ERAP1
Ensembl transcript ID ENST00000414384
Genbank transcript ID N/A
UniProt peptide Q9NZ08
alteration type single base exchange
alteration region CDS
DNA changes c.2188C>G
cDNA.2285C>G
g.24952C>G
AA changes Q730E Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
730
frameshift no
known variant Reference ID: rs27044
databasehomozygous (C/C)heterozygousallele carriers
1000G118710282215
ExAC29447-261273320

known disease mutation at this position, please check HGMD for details (HGMD ID CM078286)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.9090.764
0.9340.592
(flanking)-1.4280.161
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased24949wt: 0.9956 / mu: 0.9965 (marginal change - not scored)wt: TGCGGAGTCAACTAC
mu: TGCGGAGTGAACTAC
 CGGA|gtca
Donor gained249460.33mu: TGCTGCGGAGTGAAC CTGC|ggag
distance from splice site 88
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      730EGSVSERMLRSQLLLLACVHNYQP
mutated  all conserved    730SVSERMLRSELLLLACVHNYQ
Ptroglodytes  all identical  ENSPTRG00000017095  730SVSERMLRSQLLLLACVHNYQ
Mmulatta  no homologue    
Fcatus  all conserved  ENSFCAG00000004966  730EGSVSQRMLRSELLLLACMCKYQ
Mmusculus  all identical  ENSMUSG00000021583  719EGSVSERMLRSQLLLLACVRNYQ
Ggallus  not conserved  ENSGALG00000014684  591EGSVSERMLRQSLLMFACVRR
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000021859  744EGSVSERMLRSYLLLFGCVRGHP
Dmelanogaster  all conserved  FBgn0039064  913DGDVATRLLRPEVLLASVLWEDI
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
22941TOPO_DOMLumenal (Potential).lost
722737HELIXlost
736736DISULFIDmight get lost (downstream of altered splice site)
741756HELIXmight get lost (downstream of altered splice site)
743743DISULFIDmight get lost (downstream of altered splice site)
757759TURNmight get lost (downstream of altered splice site)
760760CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
765767HELIXmight get lost (downstream of altered splice site)
768775HELIXmight get lost (downstream of altered splice site)
779791HELIXmight get lost (downstream of altered splice site)
795805HELIXmight get lost (downstream of altered splice site)
811823HELIXmight get lost (downstream of altered splice site)
824827STRANDmight get lost (downstream of altered splice site)
829831HELIXmight get lost (downstream of altered splice site)
832840HELIXmight get lost (downstream of altered splice site)
843845TURNmight get lost (downstream of altered splice site)
846864HELIXmight get lost (downstream of altered splice site)
869877HELIXmight get lost (downstream of altered splice site)
878881TURNmight get lost (downstream of altered splice site)
885896HELIXmight get lost (downstream of altered splice site)
897900TURNmight get lost (downstream of altered splice site)
901901CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
902904TURNmight get lost (downstream of altered splice site)
906941HELIXmight get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2826 / 2826
position (AA) of stopcodon in wt / mu AA sequence 942 / 942
position of stopcodon in wt / mu cDNA 2923 / 2923
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 98 / 98
chromosome 5
strand -1
last intron/exon boundary 3086
theoretical NMD boundary in CDS 2938
length of CDS 2826
coding sequence (CDS) position 2188
cDNA position
(for ins/del: last normal base / first normal base)
2285
gDNA position
(for ins/del: last normal base / first normal base)
24952
chromosomal position
(for ins/del: last normal base / first normal base)
96118852
original gDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered gDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
original cDNA sequence snippet CAGAGCGAATGCTGCGGAGTCAACTACTACTCCTCGCCTGT
altered cDNA sequence snippet CAGAGCGAATGCTGCGGAGTGAACTACTACTCCTCGCCTGT
wildtype AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSQ LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLER M*
mutated AA sequence MVFLPLKWSL ATMSFLLSSL LALLTVSTPS WCQSTEASPK RSDGTPFPWN KIRLPEYVIP
VHYDLLIHAN LTTLTFWGTT KVEITASQPT STIILHSHHL QISRATLRKG AGERLSEEPL
QVLEHPRQEQ IALLAPEPLL VGLPYTVVIH YAGNLSETFH GFYKSTYRTK EGELRILAST
QFEPTAARMA FPCFDEPAFK ASFSIKIRRE PRHLAISNMP LVKSVTVAEG LIEDHFDVTV
KMSTYLVAFI ISDFESVSKI TKSGVKVSVY AVPDKINQAD YALDAAVTLL EFYEDYFSIP
YPLPKQDLAA IPDFQSGAME NWGLTTYRES ALLFDAEKSS ASSKLGITMT VAHELAHQWF
GNLVTMEWWN DLWLNEGFAK FMEFVSVSVT HPELKVGDYF FGKCFDAMEV DALNSSHPVS
TPVENPAQIR EMFDDVSYDK GACILNMLRE YLSADAFKSG IVQYLQKHSY KNTKNEDLWD
SMASICPTDG VKGMDGFCSR SQHSSSSSHW HQEGVDVKTM MNTWTLQKGF PLITITVRGR
NVHMKQEHYM KGSDGAPDTG YLWHVPLTFI TSKSDMVHRF LLKTKTDVLI LPEEVEWIKF
NVGMNGYYIV HYEDDGWDSL TGLLKGTHTA VSSNDRASLI NNAFQLVSIG KLSIEKALDL
SLYLKHETEI MPVFQGLNEL IPMYKLMEKR DMNEVETQFK AFLIRLLRDL IDKQTWTDEG
SVSERMLRSE LLLLACVHNY QPCVQRAEGY FRKWKESNGN LSLPVDVTLA VFAVGAQSTE
GWDFLYSKYQ FSLSSTEKSQ IEFALCRTQN KEKLQWLLDE SFKGDKIKTQ EFPQILTLIG
RNPVGYPLAW QFLRKNWNKL VQKFELGSSS IAHMVMGTTN QFSTRTRLEE VKGFFSSLKE
NGSQLRCVQQ TIETIEENIG WMDKNFDKIR VWLQSEKLER M*
speed 1.28 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems