Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 3 transcript(s)...
Querying Taster for transcript #1: ENST00000490799
Querying Taster for transcript #2: ENST00000394602
Querying Taster for transcript #3: ENST00000355574
MT speed 0 s - this script 3.788204 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
SLC26A8polymorphism_automatic4.9960036108132e-15simple_aaeaffectedI534Vsingle base exchangers2295852show file
SLC26A8polymorphism_automatic7.99360577730113e-15simple_aaeaffectedI639Vsingle base exchangers2295852show file
SLC26A8polymorphism_automatic7.99360577730113e-15simple_aaeaffectedI639Vsingle base exchangers2295852show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999995 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr6:35923246T>CN/A show variant in all transcripts   IGV
HGNC symbol SLC26A8
Ensembl transcript ID ENST00000394602
Genbank transcript ID NM_138718
UniProt peptide Q96RN1
alteration type single base exchange
alteration region CDS
DNA changes c.1600A>G
cDNA.1766A>G
g.69400A>G
AA changes I534V Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
534
frameshift no
known variant Reference ID: rs2295852
databasehomozygous (C/C)heterozygousallele carriers
1000G51910031522
ExAC80121674324755
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.6440.003
-0.9660
(flanking)-0.5660.005
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased69404wt: 0.34 / mu: 0.44wt: CATTAACCTGATTCA
mu: CGTTAACCTGATTCA
 TTAA|cctg
Donor gained693990.62mu: TCCTCCGTTAACCTG CTCC|gtta
distance from splice site 52
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      534FENKLDPEASSINLIHCSHFESMN
mutated  all conserved    534FENKLDPEASSVNLIHCS
Ptroglodytes  all conserved  ENSPTRG00000018095  639FENKLDPEASSVNLIHCSHFESM
Mmulatta  all conserved  ENSMMUG00000008442  626FENKLDPDASSVNLIHCSHFESV
Fcatus  no alignment  ENSFCAG00000014824  n/a
Mmusculus  all identical  ENSMUSG00000036196  637YENRQEQD-SSINLIRCSYLGSG
Ggallus  not conserved  ENSGALG00000000844  576-------------LVKSCHIDS-
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
519970TOPO_DOMCytoplasmic (Potential).lost
543795DOMAINSTAS.might get lost (downstream of altered splice site)
560560CONFLICTS -> C (in Ref. 3; AAL26868/AAO26699).might get lost (downstream of altered splice site)
664970REGIONInteraction with RACGAP1.might get lost (downstream of altered splice site)
914914MUTAGENP->S: Not a cause of male infertility.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2598 / 2598
position (AA) of stopcodon in wt / mu AA sequence 866 / 866
position of stopcodon in wt / mu cDNA 2764 / 2764
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 167 / 167
chromosome 6
strand -1
last intron/exon boundary 2324
theoretical NMD boundary in CDS 2107
length of CDS 2598
coding sequence (CDS) position 1600
cDNA position
(for ins/del: last normal base / first normal base)
1766
gDNA position
(for ins/del: last normal base / first normal base)
69400
chromosomal position
(for ins/del: last normal base / first normal base)
35923246
original gDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered gDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
original cDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered cDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
wildtype AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQI IGFTVIANKI SMATETSQTL IDMIPYSFLL
PVTPDFSLLP KIILQAFSLS LVSSFLLIFL GKKIASLHNY SVNSNQDLIA IGLCNVVSSF
FRSCVFTGAI ARTIIQDKSG GRQQFASLVG AGVMLLLMVK MGHFFYTLPN AVLAGIILSN
VIPYLETISN LPSLWRQDQY DCALWMMTFS SSIFLGLDIG LIISVVSAFF ITTVRSHRAK
ILLLGQIPNT NIYRSINDYR EIITIPGVKI FQCCSSITFV NVYYLKHKLL KEVDMVKVPL
KEEEIFSLFN SSDTNLQGGK ICRCFCNCDD LEPLPRILYT ERFENKLDPE ASSINLIHCS
HFESMNTSQT ASEDQVPYTV SSVSQKNQGQ QYEEVEEVWL PNNSSRNSSP GLPDVAESQG
RRSLIPYSDA SLLPSVHTII LDFSMVHYVD SRGLVVLRQI CNAFQNANIL ILIAGCHSSI
VRAFERNDFF DAGITKTQLF LSVHDAVLFA LSRKVIGSSE LSIDESETVI RETYSETDKN
DNSRYKMSSS FLGSQKNVSP GFIKIQQPVE EESELDLELE SEQEAGLGLD LDLDRELEPE
MEPKAETETK TQTEMEPQPE TEPEMEPNPK SRPRAHTFPQ QRYWPMYHPS MASTQSQTQT
RTWSVERRRH PMDSYSPEGN SNEDV*
mutated AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQI IGFTVIANKI SMATETSQTL IDMIPYSFLL
PVTPDFSLLP KIILQAFSLS LVSSFLLIFL GKKIASLHNY SVNSNQDLIA IGLCNVVSSF
FRSCVFTGAI ARTIIQDKSG GRQQFASLVG AGVMLLLMVK MGHFFYTLPN AVLAGIILSN
VIPYLETISN LPSLWRQDQY DCALWMMTFS SSIFLGLDIG LIISVVSAFF ITTVRSHRAK
ILLLGQIPNT NIYRSINDYR EIITIPGVKI FQCCSSITFV NVYYLKHKLL KEVDMVKVPL
KEEEIFSLFN SSDTNLQGGK ICRCFCNCDD LEPLPRILYT ERFENKLDPE ASSVNLIHCS
HFESMNTSQT ASEDQVPYTV SSVSQKNQGQ QYEEVEEVWL PNNSSRNSSP GLPDVAESQG
RRSLIPYSDA SLLPSVHTII LDFSMVHYVD SRGLVVLRQI CNAFQNANIL ILIAGCHSSI
VRAFERNDFF DAGITKTQLF LSVHDAVLFA LSRKVIGSSE LSIDESETVI RETYSETDKN
DNSRYKMSSS FLGSQKNVSP GFIKIQQPVE EESELDLELE SEQEAGLGLD LDLDRELEPE
MEPKAETETK TQTEMEPQPE TEPEMEPNPK SRPRAHTFPQ QRYWPMYHPS MASTQSQTQT
RTWSVERRRH PMDSYSPEGN SNEDV*
speed 0.68 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999992 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr6:35923246T>CN/A show variant in all transcripts   IGV
HGNC symbol SLC26A8
Ensembl transcript ID ENST00000490799
Genbank transcript ID NM_052961
UniProt peptide Q96RN1
alteration type single base exchange
alteration region CDS
DNA changes c.1915A>G
cDNA.2269A>G
g.69400A>G
AA changes I639V Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
639
frameshift no
known variant Reference ID: rs2295852
databasehomozygous (C/C)heterozygousallele carriers
1000G51910031522
ExAC80121674324755
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.6440.003
-0.9660
(flanking)-0.5660.005
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased69404wt: 0.34 / mu: 0.44wt: CATTAACCTGATTCA
mu: CGTTAACCTGATTCA
 TTAA|cctg
Donor gained693990.62mu: TCCTCCGTTAACCTG CTCC|gtta
distance from splice site 52
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      639FENKLDPEASSINLIHCSHFESMN
mutated  all conserved    639FENKLDPEASSVNLIHCSHFESM
Ptroglodytes  all conserved  ENSPTRG00000018095  639FENKLDPEASSVNLIHCSHFESM
Mmulatta  all conserved  ENSMMUG00000008442  629FENKLDPDASSVNLIHCSHFESV
Fcatus  no alignment  ENSFCAG00000014824  n/a
Mmusculus  all identical  ENSMUSG00000036196  637YENRQEQD-SSINLIRCSYLGSG
Ggallus  not conserved  ENSGALG00000000844  577-------------LVKSCHIDS-
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
519970TOPO_DOMCytoplasmic (Potential).lost
543795DOMAINSTAS.lost
664970REGIONInteraction with RACGAP1.might get lost (downstream of altered splice site)
914914MUTAGENP->S: Not a cause of male infertility.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2913 / 2913
position (AA) of stopcodon in wt / mu AA sequence 971 / 971
position of stopcodon in wt / mu cDNA 3267 / 3267
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 355 / 355
chromosome 6
strand -1
last intron/exon boundary 2827
theoretical NMD boundary in CDS 2422
length of CDS 2913
coding sequence (CDS) position 1915
cDNA position
(for ins/del: last normal base / first normal base)
2269
gDNA position
(for ins/del: last normal base / first normal base)
69400
chromosomal position
(for ins/del: last normal base / first normal base)
35923246
original gDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered gDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
original cDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered cDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
wildtype AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQL IMGVLGLGFI ATYLPESAMS AYLAAVALHI
MLSQLTFIFG IMISFHAGPI SFFYDIINYC VALPKANSTS ILVFLTVVVA LRINKCIRIS
FNQYPIEFPM ELFLIIGFTV IANKISMATE TSQTLIDMIP YSFLLPVTPD FSLLPKIILQ
AFSLSLVSSF LLIFLGKKIA SLHNYSVNSN QDLIAIGLCN VVSSFFRSCV FTGAIARTII
QDKSGGRQQF ASLVGAGVML LLMVKMGHFF YTLPNAVLAG IILSNVIPYL ETISNLPSLW
RQDQYDCALW MMTFSSSIFL GLDIGLIISV VSAFFITTVR SHRAKILLLG QIPNTNIYRS
INDYREIITI PGVKIFQCCS SITFVNVYYL KHKLLKEVDM VKVPLKEEEI FSLFNSSDTN
LQGGKICRCF CNCDDLEPLP RILYTERFEN KLDPEASSIN LIHCSHFESM NTSQTASEDQ
VPYTVSSVSQ KNQGQQYEEV EEVWLPNNSS RNSSPGLPDV AESQGRRSLI PYSDASLLPS
VHTIILDFSM VHYVDSRGLV VLRQICNAFQ NANILILIAG CHSSIVRAFE RNDFFDAGIT
KTQLFLSVHD AVLFALSRKV IGSSELSIDE SETVIRETYS ETDKNDNSRY KMSSSFLGSQ
KNVSPGFIKI QQPVEEESEL DLELESEQEA GLGLDLDLDR ELEPEMEPKA ETETKTQTEM
EPQPETEPEM EPNPKSRPRA HTFPQQRYWP MYHPSMASTQ SQTQTRTWSV ERRRHPMDSY
SPEGNSNEDV *
mutated AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQL IMGVLGLGFI ATYLPESAMS AYLAAVALHI
MLSQLTFIFG IMISFHAGPI SFFYDIINYC VALPKANSTS ILVFLTVVVA LRINKCIRIS
FNQYPIEFPM ELFLIIGFTV IANKISMATE TSQTLIDMIP YSFLLPVTPD FSLLPKIILQ
AFSLSLVSSF LLIFLGKKIA SLHNYSVNSN QDLIAIGLCN VVSSFFRSCV FTGAIARTII
QDKSGGRQQF ASLVGAGVML LLMVKMGHFF YTLPNAVLAG IILSNVIPYL ETISNLPSLW
RQDQYDCALW MMTFSSSIFL GLDIGLIISV VSAFFITTVR SHRAKILLLG QIPNTNIYRS
INDYREIITI PGVKIFQCCS SITFVNVYYL KHKLLKEVDM VKVPLKEEEI FSLFNSSDTN
LQGGKICRCF CNCDDLEPLP RILYTERFEN KLDPEASSVN LIHCSHFESM NTSQTASEDQ
VPYTVSSVSQ KNQGQQYEEV EEVWLPNNSS RNSSPGLPDV AESQGRRSLI PYSDASLLPS
VHTIILDFSM VHYVDSRGLV VLRQICNAFQ NANILILIAG CHSSIVRAFE RNDFFDAGIT
KTQLFLSVHD AVLFALSRKV IGSSELSIDE SETVIRETYS ETDKNDNSRY KMSSSFLGSQ
KNVSPGFIKI QQPVEEESEL DLELESEQEA GLGLDLDLDR ELEPEMEPKA ETETKTQTEM
EPQPETEPEM EPNPKSRPRA HTFPQQRYWP MYHPSMASTQ SQTQTRTWSV ERRRHPMDSY
SPEGNSNEDV *
speed 1.03 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999992 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr6:35923246T>CN/A show variant in all transcripts   IGV
HGNC symbol SLC26A8
Ensembl transcript ID ENST00000355574
Genbank transcript ID NM_001193476
UniProt peptide Q96RN1
alteration type single base exchange
alteration region CDS
DNA changes c.1915A>G
cDNA.2086A>G
g.69400A>G
AA changes I639V Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
639
frameshift no
known variant Reference ID: rs2295852
databasehomozygous (C/C)heterozygousallele carriers
1000G51910031522
ExAC80121674324755
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.6440.003
-0.9660
(flanking)-0.5660.005
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased69404wt: 0.34 / mu: 0.44wt: CATTAACCTGATTCA
mu: CGTTAACCTGATTCA
 TTAA|cctg
Donor gained693990.62mu: TCCTCCGTTAACCTG CTCC|gtta
distance from splice site 52
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      639FENKLDPEASSINLIHCSHFESMN
mutated  all conserved    639FENKLDPEASSVNLIHCSHFESM
Ptroglodytes  all conserved  ENSPTRG00000018095  639FENKLDPEASSVNLIHCSHFESM
Mmulatta  all conserved  ENSMMUG00000008442  629FENKLDPDASSVNLIHCSHFESV
Fcatus  no alignment  ENSFCAG00000014824  n/a
Mmusculus  all identical  ENSMUSG00000036196  637YENRQEQD-SSINLIRCSYLGSG
Ggallus  not conserved  ENSGALG00000000844  577-------------LVKSCHIDS-
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
519970TOPO_DOMCytoplasmic (Potential).lost
543795DOMAINSTAS.lost
664970REGIONInteraction with RACGAP1.might get lost (downstream of altered splice site)
914914MUTAGENP->S: Not a cause of male infertility.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2913 / 2913
position (AA) of stopcodon in wt / mu AA sequence 971 / 971
position of stopcodon in wt / mu cDNA 3084 / 3084
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 172 / 172
chromosome 6
strand -1
last intron/exon boundary 2644
theoretical NMD boundary in CDS 2422
length of CDS 2913
coding sequence (CDS) position 1915
cDNA position
(for ins/del: last normal base / first normal base)
2086
gDNA position
(for ins/del: last normal base / first normal base)
69400
chromosomal position
(for ins/del: last normal base / first normal base)
35923246
original gDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered gDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
original cDNA sequence snippet TGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCA
altered cDNA sequence snippet TGGATCCCGAAGCATCCTCCGTTAACCTGATTCACTGCTCA
wildtype AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQL IMGVLGLGFI ATYLPESAMS AYLAAVALHI
MLSQLTFIFG IMISFHAGPI SFFYDIINYC VALPKANSTS ILVFLTVVVA LRINKCIRIS
FNQYPIEFPM ELFLIIGFTV IANKISMATE TSQTLIDMIP YSFLLPVTPD FSLLPKIILQ
AFSLSLVSSF LLIFLGKKIA SLHNYSVNSN QDLIAIGLCN VVSSFFRSCV FTGAIARTII
QDKSGGRQQF ASLVGAGVML LLMVKMGHFF YTLPNAVLAG IILSNVIPYL ETISNLPSLW
RQDQYDCALW MMTFSSSIFL GLDIGLIISV VSAFFITTVR SHRAKILLLG QIPNTNIYRS
INDYREIITI PGVKIFQCCS SITFVNVYYL KHKLLKEVDM VKVPLKEEEI FSLFNSSDTN
LQGGKICRCF CNCDDLEPLP RILYTERFEN KLDPEASSIN LIHCSHFESM NTSQTASEDQ
VPYTVSSVSQ KNQGQQYEEV EEVWLPNNSS RNSSPGLPDV AESQGRRSLI PYSDASLLPS
VHTIILDFSM VHYVDSRGLV VLRQICNAFQ NANILILIAG CHSSIVRAFE RNDFFDAGIT
KTQLFLSVHD AVLFALSRKV IGSSELSIDE SETVIRETYS ETDKNDNSRY KMSSSFLGSQ
KNVSPGFIKI QQPVEEESEL DLELESEQEA GLGLDLDLDR ELEPEMEPKA ETETKTQTEM
EPQPETEPEM EPNPKSRPRA HTFPQQRYWP MYHPSMASTQ SQTQTRTWSV ERRRHPMDSY
SPEGNSNEDV *
mutated AA sequence MAQLERSAIS GFSSKSRRNS FAYDVKREVY NEETFQQEHK RKASSSGNMN INITTFRHHV
QCRCSWHRFL RCVLTIFPFL EWMCMYRLKD WLLGDLLAGI SVGLVQVPQG LTLSLLARQL
IPPLNIAYAA FCSSVIYVIF GSCHQMSIGS FFLVSALLIN VLKVSPFNNG QLVMGSFVKN
EFSAPSYLMG YNKSLSVVAT TTFLTGIIQL IMGVLGLGFI ATYLPESAMS AYLAAVALHI
MLSQLTFIFG IMISFHAGPI SFFYDIINYC VALPKANSTS ILVFLTVVVA LRINKCIRIS
FNQYPIEFPM ELFLIIGFTV IANKISMATE TSQTLIDMIP YSFLLPVTPD FSLLPKIILQ
AFSLSLVSSF LLIFLGKKIA SLHNYSVNSN QDLIAIGLCN VVSSFFRSCV FTGAIARTII
QDKSGGRQQF ASLVGAGVML LLMVKMGHFF YTLPNAVLAG IILSNVIPYL ETISNLPSLW
RQDQYDCALW MMTFSSSIFL GLDIGLIISV VSAFFITTVR SHRAKILLLG QIPNTNIYRS
INDYREIITI PGVKIFQCCS SITFVNVYYL KHKLLKEVDM VKVPLKEEEI FSLFNSSDTN
LQGGKICRCF CNCDDLEPLP RILYTERFEN KLDPEASSVN LIHCSHFESM NTSQTASEDQ
VPYTVSSVSQ KNQGQQYEEV EEVWLPNNSS RNSSPGLPDV AESQGRRSLI PYSDASLLPS
VHTIILDFSM VHYVDSRGLV VLRQICNAFQ NANILILIAG CHSSIVRAFE RNDFFDAGIT
KTQLFLSVHD AVLFALSRKV IGSSELSIDE SETVIRETYS ETDKNDNSRY KMSSSFLGSQ
KNVSPGFIKI QQPVEEESEL DLELESEQEA GLGLDLDLDR ELEPEMEPKA ETETKTQTEM
EPQPETEPEM EPNPKSRPRA HTFPQQRYWP MYHPSMASTQ SQTQTRTWSV ERRRHPMDSY
SPEGNSNEDV *
speed 0.71 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems