Yum, tasty mutations...

MutationTaster - study a chromosomal position

 MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 5 transcript(s)...
Querying Taster for transcript #1: ENST00000371929
Querying Taster for transcript #2: ENST00000355699
Querying Taster for transcript #3: ENST00000356589
Querying Taster for transcript #4: ENST00000371916
Querying Taster for transcript #5: ENST00000536611
MT speed 0 s - this script 4.452074 s

Results

genesymbolpredictionprobabilitymodelprediction
problem		splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
ADAMTS13disease_causing_automatic1without_aaeaffected0single base exchangers121908473show file
ADAMTS13disease_causing_automatic1simple_aaeaffected0R528Gsingle base exchangers121908473show file
ADAMTS13disease_causing_automatic1simple_aaeaffected0R528Gsingle base exchangers121908473show file
ADAMTS13disease_causing_automatic1simple_aaeaffected0R497Gsingle base exchangers121908473show file
ADAMTS13disease_causing_automatic1simple_aaeaffected0R200Gsingle base exchangers121908473show file

Taster files

Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: without_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • known disease mutation at this position (HGMD CM012890)
  • known disease mutation: rs5804 (pathogenic)
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136303015A>GN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000371916
Genbank transcript ID N/A
UniProt peptide N/A
alteration type single base exchange
alteration region 3'UTR
DNA changes cDNA.1725A>G
g.23538A>G
AA changes N/A
position(s) of altered AA
if AA alteration in CDS		 N/A
frameshift N/A
known variant Reference ID: rs121908473
databasehomozygous (G/G)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs5804 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
Gene Associated, Regulatory Feature, Gene associated regulatory feature
CTCF, Transcription Factor, CCCTC-binding factor
DNase1, Open Chromatin, DNase1 Hypersensitive Site
Rad21, Transcription Factor, Rad21 Transcription Factor Binding
phyloP / phastCons
PhyloPPhastCons
(flanking)3.1951
0.4281
(flanking)0.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
splice site change occurs after stopcodon (at aa 425) splice site change occurs after stopcodon (at aa 427)
effectgDNA positionscoredetection sequence  exon-intron border
Donor lost23539sequence motif lost- wt: CAGG|gtag
 mu: CGGG.gtag
Acc marginally increased23528wt: 0.3771 / mu: 0.4347 (marginal change - not scored)wt: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGGGTAGGCGT
mu: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCGGGGTAGGCGT		 gtcg|GGCA
Donor increased23532wt: 0.25 / mu: 0.72wt: CGGGCAGCTGCAGGG
mu: CGGGCAGCTGCGGGG		 GGCA|gctg
Donor decreased23539wt: 0.69 / mu: 0.28wt: CTGCAGGGTAGGCGT
mu: CTGCGGGGTAGGCGT		 GCAG|ggta
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes		 N/A
protein features N/A
length of protein N/A
AA sequence altered N/A
position of stopcodon in wt / mu CDS N/A
position (AA) of stopcodon in wt / mu AA sequence N/A
position of stopcodon in wt / mu cDNA N/A
poly(A) signal signal is predicted to be ok
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 445 / 445
chromosome 9
strand 1
last intron/exon boundary 4221
theoretical NMD boundary in CDS 3726
length of CDS 831
coding sequence (CDS) position N/A
cDNA position
(for ins/del: last normal base / first normal base)		 1725
gDNA position
(for ins/del: last normal base / first normal base)		 23538
chromosomal position
(for ins/del: last normal base / first normal base)		 136303015
original gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGGTAGGCGTGTGTGGACAT
altered gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGGTAGGCGTGTGTGGACAT
original cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGACATTTGGCTGTGATGGT
altered cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGACATTTGGCTGTGATGGT
wildtype AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHRI CARPSPATQT
RWTKAAAAAS SFLSWMGQNV AWRSGAPRVA AAPWWS*
mutated AA sequence N/A
speed 0.73 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM012890)
  • known disease mutation: rs5804 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136303015A>GN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000371929
Genbank transcript ID NM_139025
UniProt peptide Q76LX8
alteration type single base exchange
alteration region CDS
DNA changes c.1582A>G
cDNA.2026A>G
g.23538A>G
AA changes R528G Score: 125 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 528
frameshift no
known variant Reference ID: rs121908473
databasehomozygous (G/G)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs5804 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
Gene Associated, Regulatory Feature, Gene associated regulatory feature
CTCF, Transcription Factor, CCCTC-binding factor
DNase1, Open Chromatin, DNase1 Hypersensitive Site
Rad21, Transcription Factor, Rad21 Transcription Factor Binding
phyloP / phastCons
PhyloPPhastCons
(flanking)3.1951
0.4281
(flanking)0.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Donor lost23539sequence motif lost- wt: CAGG|gtag
 mu: CGGG.gtag
Acc marginally increased23528wt: 0.3771 / mu: 0.4347 (marginal change - not scored)wt: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGGGTAGGCGT
mu: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCGGGGTAGGCGT		 gtcg|GGCA
Donor increased23532wt: 0.25 / mu: 0.72wt: CGGGCAGCTGCAGGG
mu: CGGGCAGCTGCGGGG		 GGCA|gctg
Donor decreased23539wt: 0.69 / mu: 0.28wt: CTGCAGGGTAGGCGT
mu: CTGCGGGGTAGGCGT		 GCAG|ggta
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      528GTLSLCVSGSCRTFGCDGRMDSQQ
mutated  not conserved    528GTLSLCVSGSCGTFGCDGRMDSQ
Ptroglodytes  all identical  ENSPTRG00000022942  486GTLSLCVSGSCRTFGCDGRM
Mmulatta  all identical  ENSMMUG00000000937  524GTLSLCVSGSCRTFGCDGRMDSQ
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000014852  533GTLSLCLLGSCRTFGCDGRMDSQ
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all conserved  ENSDARG00000076270  527ACLSGKCQLFGCDGALHSG
Dmelanogaster  not conserved  FBgn0086408  824ISGRCERFSCD
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
526530STRANDlost
534536STRANDmight get lost (downstream of altered splice site)
552552CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
554562STRANDmight get lost (downstream of altered splice site)
556685REGIONSpacer.might get lost (downstream of altered splice site)
569576STRANDmight get lost (downstream of altered splice site)
579579CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
581588STRANDmight get lost (downstream of altered splice site)
592599STRANDmight get lost (downstream of altered splice site)
602605STRANDmight get lost (downstream of altered splice site)
608610STRANDmight get lost (downstream of altered splice site)
614614CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
614618STRANDmight get lost (downstream of altered splice site)
623632STRANDmight get lost (downstream of altered splice site)
634636STRANDmight get lost (downstream of altered splice site)
638647STRANDmight get lost (downstream of altered splice site)
653661STRANDmight get lost (downstream of altered splice site)
663665HELIXmight get lost (downstream of altered splice site)
667667CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
667669HELIXmight get lost (downstream of altered splice site)
673680STRANDmight get lost (downstream of altered splice site)
682730DOMAINTSP type-1 2.might get lost (downstream of altered splice site)
707707CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
742805DOMAINTSP type-1 3.might get lost (downstream of altered splice site)
808859DOMAINTSP type-1 4.might get lost (downstream of altered splice site)
828828CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
896950DOMAINTSP type-1 5.might get lost (downstream of altered splice site)
9511011DOMAINTSP type-1 6.might get lost (downstream of altered splice site)
10121068DOMAINTSP type-1 7.might get lost (downstream of altered splice site)
10721131DOMAINTSP type-1 8.might get lost (downstream of altered splice site)
11921298DOMAINCUB 1.might get lost (downstream of altered splice site)
12351235CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
12991427DOMAINCUB 2.might get lost (downstream of altered splice site)
13541354CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 4284 / 4284
position (AA) of stopcodon in wt / mu AA sequence 1428 / 1428
position of stopcodon in wt / mu cDNA 4728 / 4728
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 445 / 445
chromosome 9
strand 1
last intron/exon boundary 4522
theoretical NMD boundary in CDS 4027
length of CDS 4284
coding sequence (CDS) position 1582
cDNA position
(for ins/del: last normal base / first normal base)		 2026
gDNA position
(for ins/del: last normal base / first normal base)		 23538
chromosomal position
(for ins/del: last normal base / first normal base)		 136303015
original gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGGTAGGCGTGTGTGGACAT
altered gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGGTAGGCGTGTGTGGACAT
original cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGACATTTGGCTGTGATGGT
altered cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGACATTTGGCTGTGATGGT
wildtype AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSAGRAR CVWDPPRPQP GSAGHPPDAQ
PGLYYSANEQ CRVAFGPKAV ACTFAREHLD MCQALSCHTD PLDQSSCSRL LVPLLDGTEC
GVEKWCSKGR CRSLVELTPI AAVHGRWSSW GPRSPCSRSC GGGVVTRRRQ CNNPRPAFGG
RACVGADLQA EMCNTQACEK TQLEFMSQQC ARTDGQPLRS SPGGASFYHW GAAVPHSQGD
ALCRHMCRAI GESFIMKRGD SFLDGTRCMP SGPREDGTLS LCVSGSCRTF GCDGRMDSQQ
VWDRCQVCGG DNSTCSPRKG SFTAGRAREY VTFLTVTPNL TSVYIANHRP LFTHLAVRIG
GRYVVAGKMS ISPNTTYPSL LEDGRVEYRV ALTEDRLPRL EEIRIWGPLQ EDADIQVYRR
YGEEYGNLTR PDITFTYFQP KPRQAWVWAA VRGPCSVSCG AGLRWVNYSC LDQARKELVE
TVQCQGSQQP PAWPEACVLE PCPPYWAVGD FGPCSASCGG GLRERPVRCV EAQGSLLKTL
PPARCRAGAQ QPAVALETCN PQPCPARWEV SEPSSCTSAG GAGLALENET CVPGADGLEA
PVTEGPGSVD EKLPAPEPCV GMSCPPGWGH LDATSAGEKA PSPWGSIRTG AQAAHVWTPA
AGSCSVSCGR GLMELRFLCM DSALRVPVQE ELCGLASKPG SRREVCQAVP CPARWQYKLA
ACSVSCGRGV VRRILYCARA HGEDDGEEIL LDTQCQGLPR PEPQEACSLE PCPPRWKVMS
LGPCSASCGL GTARRSVACV QLDQGQDVEV DEAACAALVR PEASVPCLIA DCTYRWHVGT
WMECSVSCGD GIQRRRDTCL GPQAQAPVPA DFCQHLPKPV TVRGCWAGPC VGQGTPSLVP
HEEAAAPGRT TATPAGASLE WSQARGLLFS PAPQPRRLLP GPQENSVQSS ACGRQHLEPT
GTIDMRGPGQ ADCAVAIGRP LGEVVTLRVL ESSLNCSAGD MLLLWGRLTW RKMCRKLLDM
TFSSKTNTLV VRQRCGRPGG GVLLRYGSQL APETFYRECD MQLFGPWGEI VSPSLSPATS
NAGGCRLFIN VAPHARIAIH ALATNMGAGT EGANASYILI RDTHSLRTTA FHGQQVLYWE
SESSQAEMEF SEGFLKAQAS LRGQYWTLQS WVPEMQDPQS WKGKEGT*
mutated AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSAGRAR CVWDPPRPQP GSAGHPPDAQ
PGLYYSANEQ CRVAFGPKAV ACTFAREHLD MCQALSCHTD PLDQSSCSRL LVPLLDGTEC
GVEKWCSKGR CRSLVELTPI AAVHGRWSSW GPRSPCSRSC GGGVVTRRRQ CNNPRPAFGG
RACVGADLQA EMCNTQACEK TQLEFMSQQC ARTDGQPLRS SPGGASFYHW GAAVPHSQGD
ALCRHMCRAI GESFIMKRGD SFLDGTRCMP SGPREDGTLS LCVSGSCGTF GCDGRMDSQQ
VWDRCQVCGG DNSTCSPRKG SFTAGRAREY VTFLTVTPNL TSVYIANHRP LFTHLAVRIG
GRYVVAGKMS ISPNTTYPSL LEDGRVEYRV ALTEDRLPRL EEIRIWGPLQ EDADIQVYRR
YGEEYGNLTR PDITFTYFQP KPRQAWVWAA VRGPCSVSCG AGLRWVNYSC LDQARKELVE
TVQCQGSQQP PAWPEACVLE PCPPYWAVGD FGPCSASCGG GLRERPVRCV EAQGSLLKTL
PPARCRAGAQ QPAVALETCN PQPCPARWEV SEPSSCTSAG GAGLALENET CVPGADGLEA
PVTEGPGSVD EKLPAPEPCV GMSCPPGWGH LDATSAGEKA PSPWGSIRTG AQAAHVWTPA
AGSCSVSCGR GLMELRFLCM DSALRVPVQE ELCGLASKPG SRREVCQAVP CPARWQYKLA
ACSVSCGRGV VRRILYCARA HGEDDGEEIL LDTQCQGLPR PEPQEACSLE PCPPRWKVMS
LGPCSASCGL GTARRSVACV QLDQGQDVEV DEAACAALVR PEASVPCLIA DCTYRWHVGT
WMECSVSCGD GIQRRRDTCL GPQAQAPVPA DFCQHLPKPV TVRGCWAGPC VGQGTPSLVP
HEEAAAPGRT TATPAGASLE WSQARGLLFS PAPQPRRLLP GPQENSVQSS ACGRQHLEPT
GTIDMRGPGQ ADCAVAIGRP LGEVVTLRVL ESSLNCSAGD MLLLWGRLTW RKMCRKLLDM
TFSSKTNTLV VRQRCGRPGG GVLLRYGSQL APETFYRECD MQLFGPWGEI VSPSLSPATS
NAGGCRLFIN VAPHARIAIH ALATNMGAGT EGANASYILI RDTHSLRTTA FHGQQVLYWE
SESSQAEMEF SEGFLKAQAS LRGQYWTLQS WVPEMQDPQS WKGKEGT*
speed 0.74 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM012890)
  • known disease mutation: rs5804 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136303015A>GN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000355699
Genbank transcript ID NM_139027
UniProt peptide Q76LX8
alteration type single base exchange
alteration region CDS
DNA changes c.1582A>G
cDNA.1702A>G
g.23538A>G
AA changes R528G Score: 125 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 528
frameshift no
known variant Reference ID: rs121908473
databasehomozygous (G/G)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs5804 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
Gene Associated, Regulatory Feature, Gene associated regulatory feature
CTCF, Transcription Factor, CCCTC-binding factor
DNase1, Open Chromatin, DNase1 Hypersensitive Site
Rad21, Transcription Factor, Rad21 Transcription Factor Binding
phyloP / phastCons
PhyloPPhastCons
(flanking)3.1951
0.4281
(flanking)0.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Donor lost23539sequence motif lost- wt: CAGG|gtag
 mu: CGGG.gtag
Acc marginally increased23528wt: 0.3771 / mu: 0.4347 (marginal change - not scored)wt: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGGGTAGGCGT
mu: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCGGGGTAGGCGT		 gtcg|GGCA
Donor increased23532wt: 0.25 / mu: 0.72wt: CGGGCAGCTGCAGGG
mu: CGGGCAGCTGCGGGG		 GGCA|gctg
Donor decreased23539wt: 0.69 / mu: 0.28wt: CTGCAGGGTAGGCGT
mu: CTGCGGGGTAGGCGT		 GCAG|ggta
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      528GTLSLCVSGSCRTFGCDGRMDSQQ
mutated  not conserved    528GTLSLCVSGSCGTFGCDGRMDSQ
Ptroglodytes  all identical  ENSPTRG00000022942  486GTLSLCVSGSCRTFGCDGRM
Mmulatta  all identical  ENSMMUG00000000937  524GTLSLCVSGSCRTFGCDGRMDSQ
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000014852  533GTLSLCLLGSCRTFGCDGRMDSQ
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all conserved  ENSDARG00000076270  527ACLSGKCQLFGCDGALHSG
Dmelanogaster  not conserved  FBgn0086408  824ISGRCERFSCD
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
526530STRANDlost
534536STRANDmight get lost (downstream of altered splice site)
552552CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
554562STRANDmight get lost (downstream of altered splice site)
556685REGIONSpacer.might get lost (downstream of altered splice site)
569576STRANDmight get lost (downstream of altered splice site)
579579CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
581588STRANDmight get lost (downstream of altered splice site)
592599STRANDmight get lost (downstream of altered splice site)
602605STRANDmight get lost (downstream of altered splice site)
608610STRANDmight get lost (downstream of altered splice site)
614614CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
614618STRANDmight get lost (downstream of altered splice site)
623632STRANDmight get lost (downstream of altered splice site)
634636STRANDmight get lost (downstream of altered splice site)
638647STRANDmight get lost (downstream of altered splice site)
653661STRANDmight get lost (downstream of altered splice site)
663665HELIXmight get lost (downstream of altered splice site)
667667CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
667669HELIXmight get lost (downstream of altered splice site)
673680STRANDmight get lost (downstream of altered splice site)
682730DOMAINTSP type-1 2.might get lost (downstream of altered splice site)
707707CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
742805DOMAINTSP type-1 3.might get lost (downstream of altered splice site)
808859DOMAINTSP type-1 4.might get lost (downstream of altered splice site)
828828CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
896950DOMAINTSP type-1 5.might get lost (downstream of altered splice site)
9511011DOMAINTSP type-1 6.might get lost (downstream of altered splice site)
10121068DOMAINTSP type-1 7.might get lost (downstream of altered splice site)
10721131DOMAINTSP type-1 8.might get lost (downstream of altered splice site)
11921298DOMAINCUB 1.might get lost (downstream of altered splice site)
12351235CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
12991427DOMAINCUB 2.might get lost (downstream of altered splice site)
13541354CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 4116 / 4116
position (AA) of stopcodon in wt / mu AA sequence 1372 / 1372
position of stopcodon in wt / mu cDNA 4236 / 4236
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 121 / 121
chromosome 9
strand 1
last intron/exon boundary 4030
theoretical NMD boundary in CDS 3859
length of CDS 4116
coding sequence (CDS) position 1582
cDNA position
(for ins/del: last normal base / first normal base)		 1702
gDNA position
(for ins/del: last normal base / first normal base)		 23538
chromosomal position
(for ins/del: last normal base / first normal base)		 136303015
original gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGGTAGGCGTGTGTGGACAT
altered gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGGTAGGCGTGTGTGGACAT
original cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGACATTTGGCTGTGATGGT
altered cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGACATTTGGCTGTGATGGT
wildtype AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSAGRAR CVWDPPRPQP GSAGHPPDAQ
PGLYYSANEQ CRVAFGPKAV ACTFAREHLD MCQALSCHTD PLDQSSCSRL LVPLLDGTEC
GVEKWCSKGR CRSLVELTPI AAVHGRWSSW GPRSPCSRSC GGGVVTRRRQ CNNPRPAFGG
RACVGADLQA EMCNTQACEK TQLEFMSQQC ARTDGQPLRS SPGGASFYHW GAAVPHSQGD
ALCRHMCRAI GESFIMKRGD SFLDGTRCMP SGPREDGTLS LCVSGSCRTF GCDGRMDSQQ
VWDRCQVCGG DNSTCSPRKG SFTAGRAREY VTFLTVTPNL TSVYIANHRP LFTHLAVRIG
GRYVVAGKMS ISPNTTYPSL LEDGRVEYRV ALTEDRLPRL EEIRIWGPLQ EDADIQVYRR
YGEEYGNLTR PDITFTYFQP KPRQAWVWAA VRGPCSVSCG AGLRWVNYSC LDQARKELVE
TVQCQGSQQP PAWPEACVLE PCPPYWAVGD FGPCSASCGG GLRERPVRCV EAQGSLLKTL
PPARCRAGAQ QPAVALETCN PQPCPARWEV SEPSSCTSAG GAGLALENET CVPGADGLEA
PVTEGPGSVD EKLPAPEPCV GMSCPPGWGH LDATSAGEKA PSPWGSIRTG AQAAHVWTPA
AGSCSVSCGR GLMELRFLCM DSALRVPVQE ELCGLASKPG SRREVCQAVP CPARWQYKLA
ACSVSCGRGV VRRILYCARA HGEDDGEEIL LDTQCQGLPR PEPQEACSLE PCPPRWKVMS
LGPCSASCGL GTARRSVACV QLDQGQDVEV DEAACAALVR PEASVPCLIA DCTYRWHVGT
WMECSVSCGD GIQRRRDTCL GPQAQAPVPA DFCQHLPKPV TVRGCWAGPC VGQGACGRQH
LEPTGTIDMR GPGQADCAVA IGRPLGEVVT LRVLESSLNC SAGDMLLLWG RLTWRKMCRK
LLDMTFSSKT NTLVVRQRCG RPGGGVLLRY GSQLAPETFY RECDMQLFGP WGEIVSPSLS
PATSNAGGCR LFINVAPHAR IAIHALATNM GAGTEGANAS YILIRDTHSL RTTAFHGQQV
LYWESESSQA EMEFSEGFLK AQASLRGQYW TLQSWVPEMQ DPQSWKGKEG T*
mutated AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSAGRAR CVWDPPRPQP GSAGHPPDAQ
PGLYYSANEQ CRVAFGPKAV ACTFAREHLD MCQALSCHTD PLDQSSCSRL LVPLLDGTEC
GVEKWCSKGR CRSLVELTPI AAVHGRWSSW GPRSPCSRSC GGGVVTRRRQ CNNPRPAFGG
RACVGADLQA EMCNTQACEK TQLEFMSQQC ARTDGQPLRS SPGGASFYHW GAAVPHSQGD
ALCRHMCRAI GESFIMKRGD SFLDGTRCMP SGPREDGTLS LCVSGSCGTF GCDGRMDSQQ
VWDRCQVCGG DNSTCSPRKG SFTAGRAREY VTFLTVTPNL TSVYIANHRP LFTHLAVRIG
GRYVVAGKMS ISPNTTYPSL LEDGRVEYRV ALTEDRLPRL EEIRIWGPLQ EDADIQVYRR
YGEEYGNLTR PDITFTYFQP KPRQAWVWAA VRGPCSVSCG AGLRWVNYSC LDQARKELVE
TVQCQGSQQP PAWPEACVLE PCPPYWAVGD FGPCSASCGG GLRERPVRCV EAQGSLLKTL
PPARCRAGAQ QPAVALETCN PQPCPARWEV SEPSSCTSAG GAGLALENET CVPGADGLEA
PVTEGPGSVD EKLPAPEPCV GMSCPPGWGH LDATSAGEKA PSPWGSIRTG AQAAHVWTPA
AGSCSVSCGR GLMELRFLCM DSALRVPVQE ELCGLASKPG SRREVCQAVP CPARWQYKLA
ACSVSCGRGV VRRILYCARA HGEDDGEEIL LDTQCQGLPR PEPQEACSLE PCPPRWKVMS
LGPCSASCGL GTARRSVACV QLDQGQDVEV DEAACAALVR PEASVPCLIA DCTYRWHVGT
WMECSVSCGD GIQRRRDTCL GPQAQAPVPA DFCQHLPKPV TVRGCWAGPC VGQGACGRQH
LEPTGTIDMR GPGQADCAVA IGRPLGEVVT LRVLESSLNC SAGDMLLLWG RLTWRKMCRK
LLDMTFSSKT NTLVVRQRCG RPGGGVLLRY GSQLAPETFY RECDMQLFGP WGEIVSPSLS
PATSNAGGCR LFINVAPHAR IAIHALATNM GAGTEGANAS YILIRDTHSL RTTAFHGQQV
LYWESESSQA EMEFSEGFLK AQASLRGQYW TLQSWVPEMQ DPQSWKGKEG T*
speed 0.85 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM012890)
  • known disease mutation: rs5804 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136303015A>GN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000356589
Genbank transcript ID NM_139026
UniProt peptide Q76LX8
alteration type single base exchange
alteration region CDS
DNA changes c.1489A>G
cDNA.1609A>G
g.23538A>G
AA changes R497G Score: 125 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 497
frameshift no
known variant Reference ID: rs121908473
databasehomozygous (G/G)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs5804 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
Gene Associated, Regulatory Feature, Gene associated regulatory feature
CTCF, Transcription Factor, CCCTC-binding factor
DNase1, Open Chromatin, DNase1 Hypersensitive Site
Rad21, Transcription Factor, Rad21 Transcription Factor Binding
phyloP / phastCons
PhyloPPhastCons
(flanking)3.1951
0.4281
(flanking)0.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Donor lost23539sequence motif lost- wt: CAGG|gtag
 mu: CGGG.gtag
Acc marginally increased23528wt: 0.3771 / mu: 0.4347 (marginal change - not scored)wt: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGGGTAGGCGT
mu: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCGGGGTAGGCGT		 gtcg|GGCA
Donor increased23532wt: 0.25 / mu: 0.72wt: CGGGCAGCTGCAGGG
mu: CGGGCAGCTGCGGGG		 GGCA|gctg
Donor decreased23539wt: 0.69 / mu: 0.28wt: CTGCAGGGTAGGCGT
mu: CTGCGGGGTAGGCGT		 GCAG|ggta
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      497GTLSLCVSGSCRTFGCDGRMDSQQ
mutated  not conserved    497GTLSLCVSGSCGTFGCDGRMDSQ
Ptroglodytes  all identical  ENSPTRG00000022942  486GTLSLCVSGSCRTFGCDGRMDSQ
Mmulatta  all identical  ENSMMUG00000000937  524GTLSLCVSGSCRTFGCDGRMDSQ
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000014852  533GTLSLCLLGSCRTFGCDGRMDSQ
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all conserved  ENSDARG00000076270  527GKCQLFGCDGALHSG
Dmelanogaster  not conserved  FBgn0086408  824RCERFSCD
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
495497STRANDlost
498500MOTIFCell attachment site (Potential).might get lost (downstream of altered splice site)
519523STRANDmight get lost (downstream of altered splice site)
526530STRANDmight get lost (downstream of altered splice site)
534536STRANDmight get lost (downstream of altered splice site)
552552CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
554562STRANDmight get lost (downstream of altered splice site)
556685REGIONSpacer.might get lost (downstream of altered splice site)
569576STRANDmight get lost (downstream of altered splice site)
579579CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
581588STRANDmight get lost (downstream of altered splice site)
592599STRANDmight get lost (downstream of altered splice site)
602605STRANDmight get lost (downstream of altered splice site)
608610STRANDmight get lost (downstream of altered splice site)
614614CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
614618STRANDmight get lost (downstream of altered splice site)
623632STRANDmight get lost (downstream of altered splice site)
634636STRANDmight get lost (downstream of altered splice site)
638647STRANDmight get lost (downstream of altered splice site)
653661STRANDmight get lost (downstream of altered splice site)
663665HELIXmight get lost (downstream of altered splice site)
667667CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
667669HELIXmight get lost (downstream of altered splice site)
673680STRANDmight get lost (downstream of altered splice site)
682730DOMAINTSP type-1 2.might get lost (downstream of altered splice site)
707707CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
742805DOMAINTSP type-1 3.might get lost (downstream of altered splice site)
808859DOMAINTSP type-1 4.might get lost (downstream of altered splice site)
828828CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
896950DOMAINTSP type-1 5.might get lost (downstream of altered splice site)
9511011DOMAINTSP type-1 6.might get lost (downstream of altered splice site)
10121068DOMAINTSP type-1 7.might get lost (downstream of altered splice site)
10721131DOMAINTSP type-1 8.might get lost (downstream of altered splice site)
11921298DOMAINCUB 1.might get lost (downstream of altered splice site)
12351235CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
12991427DOMAINCUB 2.might get lost (downstream of altered splice site)
13541354CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 4023 / 4023
position (AA) of stopcodon in wt / mu AA sequence 1341 / 1341
position of stopcodon in wt / mu cDNA 4143 / 4143
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 121 / 121
chromosome 9
strand 1
last intron/exon boundary 3937
theoretical NMD boundary in CDS 3766
length of CDS 4023
coding sequence (CDS) position 1489
cDNA position
(for ins/del: last normal base / first normal base)		 1609
gDNA position
(for ins/del: last normal base / first normal base)		 23538
chromosomal position
(for ins/del: last normal base / first normal base)		 136303015
original gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGGTAGGCGTGTGTGGACAT
altered gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGGTAGGCGTGTGTGGACAT
original cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGACATTTGGCTGTGATGGT
altered cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGACATTTGGCTGTGATGGT
wildtype AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSANEQC RVAFGPKAVA CTFAREHLDM
CQALSCHTDP LDQSSCSRLL VPLLDGTECG VEKWCSKGRC RSLVELTPIA AVHGRWSSWG
PRSPCSRSCG GGVVTRRRQC NNPRPAFGGR ACVGADLQAE MCNTQACEKT QLEFMSQQCA
RTDGQPLRSS PGGASFYHWG AAVPHSQGDA LCRHMCRAIG ESFIMKRGDS FLDGTRCMPS
GPREDGTLSL CVSGSCRTFG CDGRMDSQQV WDRCQVCGGD NSTCSPRKGS FTAGRAREYV
TFLTVTPNLT SVYIANHRPL FTHLAVRIGG RYVVAGKMSI SPNTTYPSLL EDGRVEYRVA
LTEDRLPRLE EIRIWGPLQE DADIQVYRRY GEEYGNLTRP DITFTYFQPK PRQAWVWAAV
RGPCSVSCGA GLRWVNYSCL DQARKELVET VQCQGSQQPP AWPEACVLEP CPPYWAVGDF
GPCSASCGGG LRERPVRCVE AQGSLLKTLP PARCRAGAQQ PAVALETCNP QPCPARWEVS
EPSSCTSAGG AGLALENETC VPGADGLEAP VTEGPGSVDE KLPAPEPCVG MSCPPGWGHL
DATSAGEKAP SPWGSIRTGA QAAHVWTPAA GSCSVSCGRG LMELRFLCMD SALRVPVQEE
LCGLASKPGS RREVCQAVPC PARWQYKLAA CSVSCGRGVV RRILYCARAH GEDDGEEILL
DTQCQGLPRP EPQEACSLEP CPPRWKVMSL GPCSASCGLG TARRSVACVQ LDQGQDVEVD
EAACAALVRP EASVPCLIAD CTYRWHVGTW MECSVSCGDG IQRRRDTCLG PQAQAPVPAD
FCQHLPKPVT VRGCWAGPCV GQGACGRQHL EPTGTIDMRG PGQADCAVAI GRPLGEVVTL
RVLESSLNCS AGDMLLLWGR LTWRKMCRKL LDMTFSSKTN TLVVRQRCGR PGGGVLLRYG
SQLAPETFYR ECDMQLFGPW GEIVSPSLSP ATSNAGGCRL FINVAPHARI AIHALATNMG
AGTEGANASY ILIRDTHSLR TTAFHGQQVL YWESESSQAE MEFSEGFLKA QASLRGQYWT
LQSWVPEMQD PQSWKGKEGT *
mutated AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLSANEQC RVAFGPKAVA CTFAREHLDM
CQALSCHTDP LDQSSCSRLL VPLLDGTECG VEKWCSKGRC RSLVELTPIA AVHGRWSSWG
PRSPCSRSCG GGVVTRRRQC NNPRPAFGGR ACVGADLQAE MCNTQACEKT QLEFMSQQCA
RTDGQPLRSS PGGASFYHWG AAVPHSQGDA LCRHMCRAIG ESFIMKRGDS FLDGTRCMPS
GPREDGTLSL CVSGSCGTFG CDGRMDSQQV WDRCQVCGGD NSTCSPRKGS FTAGRAREYV
TFLTVTPNLT SVYIANHRPL FTHLAVRIGG RYVVAGKMSI SPNTTYPSLL EDGRVEYRVA
LTEDRLPRLE EIRIWGPLQE DADIQVYRRY GEEYGNLTRP DITFTYFQPK PRQAWVWAAV
RGPCSVSCGA GLRWVNYSCL DQARKELVET VQCQGSQQPP AWPEACVLEP CPPYWAVGDF
GPCSASCGGG LRERPVRCVE AQGSLLKTLP PARCRAGAQQ PAVALETCNP QPCPARWEVS
EPSSCTSAGG AGLALENETC VPGADGLEAP VTEGPGSVDE KLPAPEPCVG MSCPPGWGHL
DATSAGEKAP SPWGSIRTGA QAAHVWTPAA GSCSVSCGRG LMELRFLCMD SALRVPVQEE
LCGLASKPGS RREVCQAVPC PARWQYKLAA CSVSCGRGVV RRILYCARAH GEDDGEEILL
DTQCQGLPRP EPQEACSLEP CPPRWKVMSL GPCSASCGLG TARRSVACVQ LDQGQDVEVD
EAACAALVRP EASVPCLIAD CTYRWHVGTW MECSVSCGDG IQRRRDTCLG PQAQAPVPAD
FCQHLPKPVT VRGCWAGPCV GQGACGRQHL EPTGTIDMRG PGQADCAVAI GRPLGEVVTL
RVLESSLNCS AGDMLLLWGR LTWRKMCRKL LDMTFSSKTN TLVVRQRCGR PGGGVLLRYG
SQLAPETFYR ECDMQLFGPW GEIVSPSLSP ATSNAGGCRL FINVAPHARI AIHALATNMG
AGTEGANASY ILIRDTHSLR TTAFHGQQVL YWESESSQAE MEFSEGFLKA QASLRGQYWT
LQSWVPEMQD PQSWKGKEGT *
speed 0.93 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM012890)
  • known disease mutation: rs5804 (pathogenic)
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136303015A>GN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000536611
Genbank transcript ID N/A
UniProt peptide Q76LX8
alteration type single base exchange
alteration region CDS
DNA changes c.598A>G
cDNA.1218A>G
g.23538A>G
AA changes R200G Score: 125 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 200
frameshift no
known variant Reference ID: rs121908473
databasehomozygous (G/G)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs5804 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012890)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
Gene Associated, Regulatory Feature, Gene associated regulatory feature
CTCF, Transcription Factor, CCCTC-binding factor
DNase1, Open Chromatin, DNase1 Hypersensitive Site
Rad21, Transcription Factor, Rad21 Transcription Factor Binding
phyloP / phastCons
PhyloPPhastCons
(flanking)3.1951
0.4281
(flanking)0.6261
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites alteration within used splice site, likely to disturb normal splicing
effectgDNA positionscoredetection sequence  exon-intron border
Donor lost23539sequence motif lost- wt: CAGG|gtag
 mu: CGGG.gtag
Acc marginally increased23528wt: 0.3771 / mu: 0.4347 (marginal change - not scored)wt: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCAGGGTAGGCGT
mu: ACCCTGAGCCTGTGTGTGTCGGGCAGCTGCGGGGTAGGCGT		 gtcg|GGCA
Donor increased23532wt: 0.25 / mu: 0.72wt: CGGGCAGCTGCAGGG
mu: CGGGCAGCTGCGGGG		 GGCA|gctg
Donor decreased23539wt: 0.69 / mu: 0.28wt: CTGCAGGGTAGGCGT
mu: CTGCGGGGTAGGCGT		 GCAG|ggta
distance from splice site 3
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      200GTLSLCVSGSCRTFGCDGRMDSQQ
mutated  not conserved    200GTLSLCVSGSCGTFGCDGRMDSQ
Ptroglodytes  all identical  ENSPTRG00000022942  486GTLSLCVSGSCRTFGCDGRMDSQ
Mmulatta  all identical  ENSMMUG00000000937  524GTLSLCVSGSCRTFGCDGRMDSQ
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000014852  533GTLSLCLLGSCRTFGCDGRMDSQ
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all conserved  ENSDARG00000076270  527GSISACLSGKCQLFGCDGALHSG
Dmelanogaster  not conserved  FBgn0086408  825-DITYCISGRCERFSCD
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
80286DOMAINPeptidase M12B.lost
202202DISULFIDBy similarity.might get lost (downstream of altered splice site)
224224METALZinc; catalytic (By similarity).might get lost (downstream of altered splice site)
225225ACT_SITEBy similarity.might get lost (downstream of altered splice site)
228228METALZinc; catalytic (By similarity).might get lost (downstream of altered splice site)
234234METALZinc; catalytic (By similarity).might get lost (downstream of altered splice site)
242242DISULFIDBy similarity.might get lost (downstream of altered splice site)
265265DISULFIDBy similarity.might get lost (downstream of altered splice site)
281281DISULFIDBy similarity.might get lost (downstream of altered splice site)
281281METALCalcium (Potential).might get lost (downstream of altered splice site)
284284METALCalcium (Potential).might get lost (downstream of altered splice site)
287383DOMAINDisintegrin.might get lost (downstream of altered splice site)
300374REGIONCysteine-rich.might get lost (downstream of altered splice site)
301303HELIXmight get lost (downstream of altered splice site)
307314HELIXmight get lost (downstream of altered splice site)
331334HELIXmight get lost (downstream of altered splice site)
337340STRANDmight get lost (downstream of altered splice site)
359361STRANDmight get lost (downstream of altered splice site)
364367STRANDmight get lost (downstream of altered splice site)
370373STRANDmight get lost (downstream of altered splice site)
374377HELIXmight get lost (downstream of altered splice site)
384439DOMAINTSP type-1 1.might get lost (downstream of altered splice site)
396396DISULFIDBy similarity.might get lost (downstream of altered splice site)
399401STRANDmight get lost (downstream of altered splice site)
400400DISULFIDBy similarity.might get lost (downstream of altered splice site)
403406STRANDmight get lost (downstream of altered splice site)
411411DISULFIDBy similarity.might get lost (downstream of altered splice site)
417419STRANDmight get lost (downstream of altered splice site)
423423DISULFIDBy similarity.might get lost (downstream of altered splice site)
430433STRANDmight get lost (downstream of altered splice site)
433433DISULFIDBy similarity.might get lost (downstream of altered splice site)
438438DISULFIDBy similarity.might get lost (downstream of altered splice site)
442451HELIXmight get lost (downstream of altered splice site)
452455TURNmight get lost (downstream of altered splice site)
470472STRANDmight get lost (downstream of altered splice site)
474476TURNmight get lost (downstream of altered splice site)
479483HELIXmight get lost (downstream of altered splice site)
486489STRANDmight get lost (downstream of altered splice site)
495497STRANDmight get lost (downstream of altered splice site)
498500MOTIFCell attachment site (Potential).might get lost (downstream of altered splice site)
519523STRANDmight get lost (downstream of altered splice site)
526530STRANDmight get lost (downstream of altered splice site)
534536STRANDmight get lost (downstream of altered splice site)
552552CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
554562STRANDmight get lost (downstream of altered splice site)
556685REGIONSpacer.might get lost (downstream of altered splice site)
569576STRANDmight get lost (downstream of altered splice site)
579579CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
581588STRANDmight get lost (downstream of altered splice site)
592599STRANDmight get lost (downstream of altered splice site)
602605STRANDmight get lost (downstream of altered splice site)
608610STRANDmight get lost (downstream of altered splice site)
614614CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
614618STRANDmight get lost (downstream of altered splice site)
623632STRANDmight get lost (downstream of altered splice site)
634636STRANDmight get lost (downstream of altered splice site)
638647STRANDmight get lost (downstream of altered splice site)
653661STRANDmight get lost (downstream of altered splice site)
663665HELIXmight get lost (downstream of altered splice site)
667667CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
667669HELIXmight get lost (downstream of altered splice site)
673680STRANDmight get lost (downstream of altered splice site)
682730DOMAINTSP type-1 2.might get lost (downstream of altered splice site)
707707CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
742805DOMAINTSP type-1 3.might get lost (downstream of altered splice site)
808859DOMAINTSP type-1 4.might get lost (downstream of altered splice site)
828828CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
896950DOMAINTSP type-1 5.might get lost (downstream of altered splice site)
9511011DOMAINTSP type-1 6.might get lost (downstream of altered splice site)
10121068DOMAINTSP type-1 7.might get lost (downstream of altered splice site)
10721131DOMAINTSP type-1 8.might get lost (downstream of altered splice site)
11921298DOMAINCUB 1.might get lost (downstream of altered splice site)
12351235CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
12991427DOMAINCUB 2.might get lost (downstream of altered splice site)
13541354CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1095 / 1095
position (AA) of stopcodon in wt / mu AA sequence 365 / 365
position of stopcodon in wt / mu cDNA 1715 / 1715
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 621 / 621
chromosome 9
strand 1
last intron/exon boundary 2046
theoretical NMD boundary in CDS 1375
length of CDS 1095
coding sequence (CDS) position 598
cDNA position
(for ins/del: last normal base / first normal base)		 1218
gDNA position
(for ins/del: last normal base / first normal base)		 23538
chromosomal position
(for ins/del: last normal base / first normal base)		 136303015
original gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGGTAGGCGTGTGTGGACAT
altered gDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGGTAGGCGTGTGTGGACAT
original cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCAGGACATTTGGCTGTGATGGT
altered cDNA sequence snippet TGTGTGTGTCGGGCAGCTGCGGGACATTTGGCTGTGATGGT
wildtype AA sequence MDMCQALSCH TDPLDQSSCS RLLVPLLDGT ECGVEKWCSK GRCRSLVELT PIAAVHGRWS
SWGPRSPCSR SCGGGVVTRR RQCNNPRPAF GGRACVGADL QAEMCNTQAC EKTQLEFMSQ
QCARTDGQPL RSSPGGASFY HWGAAVPHSQ GDALCRHMCR AIGESFIMKR GDSFLDGTRC
MPSGPREDGT LSLCVSGSCR TFGCDGRMDS QQVWDRCQVC GGDNSTCSPR KGSFTAGRAR
EYVTFLTVTP NLTSVYIANH RPLFTHLAVR IGGRYVVAGK MSISPNTTYP SLLEDGRVEY
RVALTEDRLP RLEEIRIWGP LQEDADIQVG GVRAQLMHIS WWSRPGLGER DLCARGRWPG
GSSD*
mutated AA sequence MDMCQALSCH TDPLDQSSCS RLLVPLLDGT ECGVEKWCSK GRCRSLVELT PIAAVHGRWS
SWGPRSPCSR SCGGGVVTRR RQCNNPRPAF GGRACVGADL QAEMCNTQAC EKTQLEFMSQ
QCARTDGQPL RSSPGGASFY HWGAAVPHSQ GDALCRHMCR AIGESFIMKR GDSFLDGTRC
MPSGPREDGT LSLCVSGSCG TFGCDGRMDS QQVWDRCQVC GGDNSTCSPR KGSFTAGRAR
EYVTFLTVTP NLTSVYIANH RPLFTHLAVR IGGRYVVAGK MSISPNTTYP SLLEDGRVEY
RVALTEDRLP RLEEIRIWGP LQEDADIQVG GVRAQLMHIS WWSRPGLGER DLCARGRWPG
GSSD*
speed 0.66 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems