Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999880737487924 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM012888)
  • known disease mutation: rs5801 (pathogenic)
  • protein features (might be) affected
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr9:136291366C>TN/A show variant in all transcripts   IGV
HGNC symbol ADAMTS13
Ensembl transcript ID ENST00000371911
Genbank transcript ID N/A
UniProt peptide Q76LX8
alteration type single base exchange
alteration region CDS
DNA changes c.587C>T
cDNA.707C>T
g.11889C>T
AA changes T196I Score: 89 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 196
frameshift no
known variant Reference ID: rs121908470
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC022

known disease mutation: rs5801 (pathogenic for Upshaw-Schulman syndrome) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM012888)

known disease mutation at this position, please check HGMD for details (HGMD ID CM012888)
known disease mutation at this position, please check HGMD for details (HGMD ID CM012888)
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)2.6011
5.0321
(flanking)0.1260.998
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased11892wt: 0.8282 / mu: 0.8458 (marginal change - not scored)wt: CACCCAGCTGGGCGG
mu: CATCCAGCTGGGCGG		 CCCA|gctg
distance from splice site 48
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      196LPDGNRQVRGVTQLGGACSPTWSC
mutated  not conserved    196LPDGNRQVRGVIQLGGACSPTWS
Ptroglodytes  all identical  ENSPTRG00000022942  200LPDGNRQVRGVTQLGGACSPTWS
Mmulatta  all identical  ENSMMUG00000000937  192LPDGNRQVRGVTQLGGACSPTWS
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000014852  198GNQQVRGVTQLGGACSLSWS
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all identical  ENSDARG00000076270  200LPNGNKLVRGVTQFGGVCSTQWN
Dmelanogaster  not conserved  FBgn0086408  456TYDKGKANSQVVGMATVKGMCTSIYS
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
80286DOMAINPeptidase M12B.lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1035 / 1035
position (AA) of stopcodon in wt / mu AA sequence 345 / 345
position of stopcodon in wt / mu cDNA 1155 / 1155
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 121 / 121
chromosome 9
strand 1
last intron/exon boundary 945
theoretical NMD boundary in CDS 774
length of CDS 1035
coding sequence (CDS) position 587
cDNA position
(for ins/del: last normal base / first normal base)		 707
gDNA position
(for ins/del: last normal base / first normal base)		 11889
chromosomal position
(for ins/del: last normal base / first normal base)		 136291366
original gDNA sequence snippet CCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCT
altered gDNA sequence snippet CCGGCAGGTGCGGGGCGTCATCCAGCTGGGCGGTGCCTGCT
original cDNA sequence snippet CCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCT
altered cDNA sequence snippet CCGGCAGGTGCGGGGCGTCATCCAGCTGGGCGGTGCCTGCT
wildtype AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVTQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLRPVPPS PLPLLATHLC AGRSLSLGPS
QEPAPGGGRG PRTPVPTHKR PRFQTLPSSC PLLRPASSRC TPRD*
mutated AA sequence MHQRHPRARC PPLCVAGILA CGFLLGCWGP SHFQQSCLQA LEPQAVSSYL SPGAPLKGRP
PSPGFQRQRQ RQRRAAGGIL HLELLVAVGP DVFQAHQEDT ERYVLTNLNI GAELLRDPSL
GAQFRVHLVK MVILTEPEGA PNITANLTSS LLSVCGWSQT INPEDDTDPG HADLVLYITR
FDLELPDGNR QVRGVIQLGG ACSPTWSCLI TEDTGFDLGV TIAHEIGHSF GLEHDGAPGS
GCGPSGHVMA SDGAAPRAGL AWSPCSRRQL LSLLRPVPPS PLPLLATHLC AGRSLSLGPS
QEPAPGGGRG PRTPVPTHKR PRFQTLPSSC PLLRPASSRC TPRD*
speed 0.63 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project