Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

polymorphism

 Model: simple_aae, prob: 0.999999999999987 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr19:43269699C>TN/A show variant in all transcripts   IGV
HGNC symbol PSG8
Ensembl transcript ID ENST00000406636
Genbank transcript ID NM_001130168
UniProt peptide Q9UQ74
alteration type single base exchange
alteration region CDS
DNA changes c.35G>A
cDNA.116G>A
g.150G>A
AA changes R12H Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 12
frameshift no
known variant Reference ID: rs7260508
databasehomozygous (T/T)heterozygousallele carriers
1000G4568741330
ExAC62702022726497
regulatory features N/A
phyloP / phastCons
PhyloPPhastCons
(flanking)-1.0470
-1.7750
(flanking)1.0760.003
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased144wt: 0.9593 / mu: 0.9638 (marginal change - not scored)wt: CCTCTCAGCCCCTCCCTGCACACAGCGCATCACCTGGAAGG
mu: CCTCTCAGCCCCTCCCTGCACACAGCACATCACCTGGAAGG		 gcac|ACAG
distance from splice site 30
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      12MGLLSAPPCTQRITWKGLLLTVET
mutated  not conserved    12MGLLSAPPCTQHITWKGLLLTVE
Ptroglodytes  not conserved  ENSPTRG00000039356  12MGLLSAPPCMQHITWKGLLLTASLLNFWNLPT
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  no homologue    
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
134SIGNALPotential.lost
1012CONFLICTTQR -> MQH (in Ref. 2; CAH18672).lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 894 / 894
position (AA) of stopcodon in wt / mu AA sequence 298 / 298
position of stopcodon in wt / mu cDNA 975 / 975
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 82 / 82
chromosome 19
strand -1
last intron/exon boundary 959
theoretical NMD boundary in CDS 827
length of CDS 894
coding sequence (CDS) position 35
cDNA position
(for ins/del: last normal base / first normal base)		 116
gDNA position
(for ins/del: last normal base / first normal base)		 150
chromosomal position
(for ins/del: last normal base / first normal base)		 43269699
original gDNA sequence snippet AGCCCCTCCCTGCACACAGCGCATCACCTGGAAGGGGCTCC
altered gDNA sequence snippet AGCCCCTCCCTGCACACAGCACATCACCTGGAAGGGGCTCC
original cDNA sequence snippet AGCCCCTCCCTGCACACAGCGCATCACCTGGAAGGGGCTCC
altered cDNA sequence snippet AGCCCCTCCCTGCACACAGCACATCACCTGGAAGGGGCTCC
wildtype AA sequence MGLLSAPPCT QRITWKGLLL TVETPKPSIS SSKLNPREAM EAVSLTCDPE TPDASYLWWM
NGQSLPMSHR LQLSETNRTL FLLGVTKYTA GPYECEIRNP VSASRSDPFT LNLLPKLPKP
YITINNLKPR ENKDVLNFTC EPKSENYTYI WWLNGQSLPV SPRVKRPIEN RILILPSVTR
NETGPYQCEI RDQYGGIRSY PVTLNVLYGP DLPRIYPSFT YYRSGEVLYL SCSADSNPPA
QYSWTINGKF QLSGQKLFIP QITTKHSGLY ACSVRNSATG KESSKSMTVK VSDWTLP*
mutated AA sequence MGLLSAPPCT QHITWKGLLL TVETPKPSIS SSKLNPREAM EAVSLTCDPE TPDASYLWWM
NGQSLPMSHR LQLSETNRTL FLLGVTKYTA GPYECEIRNP VSASRSDPFT LNLLPKLPKP
YITINNLKPR ENKDVLNFTC EPKSENYTYI WWLNGQSLPV SPRVKRPIEN RILILPSVTR
NETGPYQCEI RDQYGGIRSY PVTLNVLYGP DLPRIYPSFT YYRSGEVLYL SCSADSNPPA
QYSWTINGKF QLSGQKLFIP QITTKHSGLY ACSVRNSATG KESSKSMTVK VSDWTLP*
speed 0.95 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project