Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999999078988 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM920234)
  • known disease mutation: rs237 (pathogenic)
  • protein features (might be) affected
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr22:43026905C>TN/A show variant in all transcripts   IGV
HGNC symbol CYB5R3
Ensembl transcript ID ENST00000361740
Genbank transcript ID NM_001171660
UniProt peptide P00387
alteration type single base exchange
alteration region CDS
DNA changes c.415G>A
cDNA.415G>A
g.18670G>A
AA changes V139M Score: 21 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 139
frameshift no
known variant Reference ID: rs121965009
databasehomozygous (T/T)heterozygousallele carriers
1000G011
ExAC055

known disease mutation: rs237 (pathogenic for Methemoglobinemia, type I) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM920234)

known disease mutation at this position, please check HGMD for details (HGMD ID CM920234)
known disease mutation at this position, please check HGMD for details (HGMD ID CM920234)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
H4K20me1, Histone, Histone 4 Lysine 20 mono-methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)2.7571
3.5420.999
(flanking)-0.9840.708
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 18
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      139TPISSDDDKGFVDLVIKVYFKDTH
mutated  all conserved    139TPISSDDDKGFMDLVIKVYFKDT
Ptroglodytes  all identical  ENSPTRG00000014461  106TPVSSDDDKGFVDLVIKVYFKDT
Mmulatta  all identical  ENSMMUG00000010198  106TPVSSDDDKGFVDLVIKVYFKDT
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000018042  83TPVSSDDDKGFVDLVVKVYFKDT
Ggallus  all identical  ENSGALG00000014122  106TPISSDDDKGFVDLVIKVYMKGV
Trubripes  all identical  ENSTRUG00000013823  104TPVSSDDDKGFVDLVVKVYFKDV
Drerio  all identical  ENSDARG00000005891  103TPVSSDDDKGFVDLVVKIYYKNI
Dmelanogaster  all identical  FBgn0036211  120TPISSDEDVGYVDLVVKVYFKDS
Celegans  all identical  T05H4.5  114TPVSSDEDLGFVDLMVKVYFKNT
Xtropicalis  all identical  ENSXETG00000016513  108TPVSSDDNRGYVDLVVKIYFKNI
protein features
start (aa)end (aa)featuredetails 
40152DOMAINFAD-binding FR-type.lost
132147NP_BINDFAD (By similarity).lost
139146STRANDlost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1005 / 1005
position (AA) of stopcodon in wt / mu AA sequence 335 / 335
position of stopcodon in wt / mu cDNA 1005 / 1005
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 1 / 1
chromosome 22
strand -1
last intron/exon boundary 833
theoretical NMD boundary in CDS 782
length of CDS 1005
coding sequence (CDS) position 415
cDNA position
(for ins/del: last normal base / first normal base)		 415
gDNA position
(for ins/del: last normal base / first normal base)		 18670
chromosomal position
(for ins/del: last normal base / first normal base)		 43026905
original gDNA sequence snippet GCGATGATGACAAGGGCTTCGTGGACCTGGTCATCAAGGTG
altered gDNA sequence snippet GCGATGATGACAAGGGCTTCATGGACCTGGTCATCAAGGTG
original cDNA sequence snippet GCGATGATGACAAGGGCTTCGTGGACCTGGTCATCAAGGTT
altered cDNA sequence snippet GCGATGATGACAAGGGCTTCATGGACCTGGTCATCAAGGTT
wildtype AA sequence MNRSLLVGCM QSKDIWGREE SICERLKQDG LDVERAESWE LGHMVLFPVW FLYSLLMKLF
QRSTPAITLE SPDIKYPLRL IDREIISHDT RRFRFALPSP QHILGLPVGQ HIYLSARIDG
NLVVRPYTPI SSDDDKGFVD LVIKVYFKDT HPKFPAGGKM SQYLESMQIG DTIEFRGPSG
LLVYQGKGKF AIRPDKKSNP IIRTVKSVGM IAGGTGITPM LQVIRAIMKD PDDHTVCHLL
FANQTEKDIL LRPELEELRN KHSARFKLWY TLDRAPEAWD YGQGFVNEEM IRDHLPPPEE
EPLVLMCGPP PMIQYACLPN LDHVGHPTER CFVF*
mutated AA sequence MNRSLLVGCM QSKDIWGREE SICERLKQDG LDVERAESWE LGHMVLFPVW FLYSLLMKLF
QRSTPAITLE SPDIKYPLRL IDREIISHDT RRFRFALPSP QHILGLPVGQ HIYLSARIDG
NLVVRPYTPI SSDDDKGFMD LVIKVYFKDT HPKFPAGGKM SQYLESMQIG DTIEFRGPSG
LLVYQGKGKF AIRPDKKSNP IIRTVKSVGM IAGGTGITPM LQVIRAIMKD PDDHTVCHLL
FANQTEKDIL LRPELEELRN KHSARFKLWY TLDRAPEAWD YGQGFVNEEM IRDHLPPPEE
EPLVLMCGPP PMIQYACLPN LDHVGHPTER CFVF*
speed 0.76 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project