|
|
mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 0.999997573622022 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
| Summary |
|
hyperlink | ||||||||||||
| analysed issue | analysis result | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| name of alteration | no title | |||||||||||||
| alteration (phys. location) | chr3:46501268C>TN/A show variant in all transcripts IGV | |||||||||||||
| HGNC symbol | LTF | |||||||||||||
| Ensembl transcript ID | ENST00000426532 | |||||||||||||
| Genbank transcript ID | NM_001199149 | |||||||||||||
| UniProt peptide | N/A | |||||||||||||
| alteration type | single base exchange | |||||||||||||
| alteration region | 5'UTR | |||||||||||||
| DNA changes | cDNA.270G>A g.25457G>A | |||||||||||||
| AA changes | N/A | |||||||||||||
| position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
| frameshift | N/A | |||||||||||||
| known variant | Reference ID: rs1126477
| |||||||||||||
| regulatory features | H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation | |||||||||||||
| phyloP / phastCons |
| |||||||||||||
| splice sites |
| |||||||||||||
| distance from splice site | 42 | |||||||||||||
| Kozak consensus sequence altered? | no | |||||||||||||
| conservation protein level for non-synonymous changes | N/A | |||||||||||||
| protein features | N/A | |||||||||||||
| length of protein | N/A | |||||||||||||
| AA sequence altered | N/A | |||||||||||||
| position of stopcodon in wt / mu CDS | N/A | |||||||||||||
| position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
| position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
| poly(A) signal | N/A | |||||||||||||
| conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
| position of start ATG in wt / mu cDNA | 318 / 318 | |||||||||||||
| chromosome | 3 | |||||||||||||
| strand | -1 | |||||||||||||
| last intron/exon boundary | 2284 | |||||||||||||
| theoretical NMD boundary in CDS | 1916 | |||||||||||||
| length of CDS | 2001 | |||||||||||||
| coding sequence (CDS) position | N/A | |||||||||||||
| cDNA position (for ins/del: last normal base / first normal base) | 270 | |||||||||||||
| gDNA position (for ins/del: last normal base / first normal base) | 25457 | |||||||||||||
| chromosomal position (for ins/del: last normal base / first normal base) | 46501268 | |||||||||||||
| original gDNA sequence snippet | GGAGGAGTGTTCAGTGGTGCGCCGTATCCCAACCCGAGGCC | |||||||||||||
| altered gDNA sequence snippet | GGAGGAGTGTTCAGTGGTGCACCGTATCCCAACCCGAGGCC | |||||||||||||
| original cDNA sequence snippet | GGAGGAGTGTTCAGTGGTGCGCCGTATCCCAACCCGAGGCC | |||||||||||||
| altered cDNA sequence snippet | GGAGGAGTGTTCAGTGGTGCACCGTATCCCAACCCGAGGCC | |||||||||||||
| wildtype AA sequence | MRKVRGPPVS CIKRDSPIQC IQAIAENRAD AVTLDGGFIY EAGLAPYKLR PVAAEVYGTE RQPRTHYYAV AVVKKGGSFQ LNELQGLKSC HTGLRRTAGW NVPIGTLRPF LNWTGPPEPI EAAVARFFSA SCVPGADKGQ FPNLCRLCAG TGENKCAFSS QEPYFSYSGA FKCLRDGAGD VAFIRESTVF EDLSDEAERD EYELLCPDNT RKPVDKFKDC HLARVPSHAV VARSVNGKED AIWNLLRQAQ EKFGKDKSPK FQLFGSPSGQ KDLLFKDSAI GFSRVPPRID SGLYLGSGYF TAIQNLRKSE EEVAARRARV VWCAVGEQEL RKCNQWSGLS EGSVTCSSAS TTEDCIALVL KGEADAMSLD GGYVYTAGKC GLVPVLAENY KSQQSSDPDP NCVDRPVEGY LAVAVVRRSD TSLTWNSVKG KKSCHTAVDR TAGWNIPMGL LFNQTGSCKF DEYFSQSCAP GSDPRSNLCA LCIGDEQGEN KCVPNSNERY YGYTGAFRCL AENAGDVAFV KDVTVLQNTD GNNNEAWAKD LKLADFALLC LDGKRKPVTE ARSCHLAMAP NHAVVSRMDK VERLKQVLLH QQAKFGRNGS DCPDKFCLFQ SETKNLLFND NTECLARLHG KTTYEKYLGP QYVAGITNLK KCSTSPLLEA CEFLRK* | |||||||||||||
| mutated AA sequence | N/A | |||||||||||||
| speed | 0.95 s | |||||||||||||