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mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 0.99999732645484 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
| Summary |
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hyperlink | ||||||||||||
| analysed issue | analysis result | |||||||||||||
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| name of alteration | no title | |||||||||||||
| alteration (phys. location) | chr6:32632782G>AN/A show variant in all transcripts IGV | |||||||||||||
| HGNC symbol | HLA-DQB1 | |||||||||||||
| Ensembl transcript ID | ENST00000399082 | |||||||||||||
| Genbank transcript ID | N/A | |||||||||||||
| UniProt peptide | N/A | |||||||||||||
| alteration type | single base exchange | |||||||||||||
| alteration region | intron | |||||||||||||
| DNA changes | g.3379C>T | |||||||||||||
| AA changes | N/A | |||||||||||||
| position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
| frameshift | N/A | |||||||||||||
| known variant | Reference ID: rs12722115
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| regulatory features | DNase1, Open Chromatin, DNase1 Hypersensitive Site H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation H3K4me3, Histone, Histone 3 Lysine 4 Tri-Methylation PolII, Polymerase, RNA Polymerase II Promoter Associated, Regulatory Feature, Promoter like regulatory feature | |||||||||||||
| phyloP / phastCons |
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| splice sites | no abrogation of potential splice sites | |||||||||||||
| distance from splice site | 1494 | |||||||||||||
| Kozak consensus sequence altered? | N/A | |||||||||||||
| conservation protein level for non-synonymous changes | N/A | |||||||||||||
| protein features | N/A | |||||||||||||
| length of protein | N/A | |||||||||||||
| AA sequence altered | N/A | |||||||||||||
| position of stopcodon in wt / mu CDS | N/A | |||||||||||||
| position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
| position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
| poly(A) signal | N/A | |||||||||||||
| conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
| position of start ATG in wt / mu cDNA | 46 / 46 | |||||||||||||
| chromosome | 6 | |||||||||||||
| strand | -1 | |||||||||||||
| last intron/exon boundary | 437 | |||||||||||||
| theoretical NMD boundary in CDS | 341 | |||||||||||||
| length of CDS | 405 | |||||||||||||
| coding sequence (CDS) position | N/A | |||||||||||||
| cDNA position (for ins/del: last normal base / first normal base) | N/A | |||||||||||||
| gDNA position (for ins/del: last normal base / first normal base) | 3379 | |||||||||||||
| chromosomal position (for ins/del: last normal base / first normal base) | 32632782 | |||||||||||||
| original gDNA sequence snippet | ACGGGACGGAGCGCGTGCGTCTTGTGACCAGATACATCTAT | |||||||||||||
| altered gDNA sequence snippet | ACGGGACGGAGCGCGTGCGTTTTGTGACCAGATACATCTAT | |||||||||||||
| original cDNA sequence snippet | N/A | |||||||||||||
| altered cDNA sequence snippet | N/A | |||||||||||||
| wildtype AA sequence | MSWKKALRIP GDLRVATVTL MLAMLSSLLA EGRDSPVEPT VTISPSRTEA LNHHNLLVCS VTDFYPGQIK VRWFRNDQEE TAGVVSTPLI RNGDWTFQIL VMLEMTPQRG DVYTCHVEHP SLQSPITVEW RLLH* | |||||||||||||
| mutated AA sequence | N/A | |||||||||||||
| speed | 0.15 s | |||||||||||||