Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

disease causing

 Model: simple_aae, prob: 0.999999384172252 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM070149)
  • known disease mutation: rs36266 (pathogenic)
  • protein features (might be) affected
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr7:44186137A>TN/A show variant in all transcripts   IGV
HGNC symbol GCK
Ensembl transcript ID ENST00000437084
Genbank transcript ID N/A
UniProt peptide P35557
alteration type single base exchange
alteration region CDS
DNA changes c.893T>A
cDNA.927T>A
g.51633T>A
AA changes L298H Score: 99 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 298
frameshift no
known variant Reference ID: rs193922338
Allele 'T' was neither found in ExAC nor 1000G.
known disease mutation: rs36266 (pathogenic for Maturity-onset diabetes of the young, type 2) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM070149)

known disease mutation at this position, please check HGMD for details (HGMD ID CM070149)
known disease mutation at this position, please check HGMD for details (HGMD ID CM070149)
regulatory features Cmyc, Transcription Factor, Cmyc TF binding
DNase1, Open Chromatin, DNase1 Hypersensitive Site
E2F6, Transcription Factor, E2F6 Transcription Factor Binding
H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K4me1, Histone, Histone 3 Lysine 4 Mono-Methylation
H3K4me2, Histone, Histone 3 Lysine 4 Di-Methylation
Max, Transcription Factor, Max TF binding
PolII, Polymerase, RNA Polymerase II
Promoter Associated, Regulatory Feature, Promoter like regulatory feature
phyloP / phastCons
PhyloPPhastCons
(flanking)0.2990.999
4.6551
(flanking)2.7731
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 76
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      298LVLLRLVDENLLFHGEASEQLRTR
mutated  not conserved    298LVLLRLVDENLHFH
Ptroglodytes  all identical  ENSPTRG00000019140  314LFHGKASEQLRT
Mmulatta  all identical  ENSMMUG00000002427  316LVLLRLVDENLLFHGEASEQLRT
Fcatus  all identical  ENSFCAG00000014361  300LVLLKLVDENLLFRG
Mmusculus  all identical  ENSMUSG00000041798  315LVLLKLVEENLLFHGEASEQLRT
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000068006  325LIFKRTTNLDYNFTVFIIIILKL
Dmelanogaster  all identical  FBgn0001186  393LVLVKMTQAGILFNGQDSEVLNT
Celegans  all identical  F14B4.2  340VLEDLAKQGLLFGGN-SDAISV
Xtropicalis  all conserved  ENSXETG00000019003  315VLIKMVNENLIFGGESSEKLKT
protein features
start (aa)end (aa)featuredetails 
295311HELIXlost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1347 / 1347
position (AA) of stopcodon in wt / mu AA sequence 449 / 449
position of stopcodon in wt / mu cDNA 1381 / 1381
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 35 / 35
chromosome 7
strand -1
last intron/exon boundary 1237
theoretical NMD boundary in CDS 1152
length of CDS 1347
coding sequence (CDS) position 893
cDNA position
(for ins/del: last normal base / first normal base)		 927
gDNA position
(for ins/del: last normal base / first normal base)		 51633
chromosomal position
(for ins/del: last normal base / first normal base)		 44186137
original gDNA sequence snippet GCTCGTGGACGAAAACCTGCTCTTCCACGGGGAGGCCTCCG
altered gDNA sequence snippet GCTCGTGGACGAAAACCTGCACTTCCACGGGGAGGCCTCCG
original cDNA sequence snippet GCTCGTGGACGAAAACCTGCTCTTCCACGGGGAGGCCTCCG
altered cDNA sequence snippet GCTCGTGGACGAAAACCTGCACTTCCACGGGGAGGCCTCCG
wildtype AA sequence MLDDRARMEA AKKEKVEQIL AEFQLQEEDL KKVMRRMQKE MDRGLRLETH EEASVKMLPT
YVRSTPEGSE VGDFLSLDLG GTNFRVMLVK VGEGEEGQWS VKTKHQMYSI PEDAMTGTAE
MMKHKKLPLG FTFSFPVRHE DIDKGILLNW TKGFKASGAE GNNVVGLLRD AIKRRGDFEM
DVVAMVNDTV ATMISCYYED HQCEVGMIVG TGCNACYMEE MQNVELVEGD EGRMCVNTEW
GAFGDSGELD EFLLEYDRLV DESSANPGQQ LYEKLIGGKY MGELVRLVLL RLVDENLLFH
GEASEQLRTR GAFETRFVSQ VESDTGDRKQ IYNILSTLGL RPSTTDCDIV RRACESVSTR
AAHMCSAGLA GVINRMRESR SEDVMRITVG VDGSVYKLHP SFKERFHASV RRLTPSCEIT
FIESEEGSGR GAALVSAVAC KKACMLGQ*
mutated AA sequence MLDDRARMEA AKKEKVEQIL AEFQLQEEDL KKVMRRMQKE MDRGLRLETH EEASVKMLPT
YVRSTPEGSE VGDFLSLDLG GTNFRVMLVK VGEGEEGQWS VKTKHQMYSI PEDAMTGTAE
MMKHKKLPLG FTFSFPVRHE DIDKGILLNW TKGFKASGAE GNNVVGLLRD AIKRRGDFEM
DVVAMVNDTV ATMISCYYED HQCEVGMIVG TGCNACYMEE MQNVELVEGD EGRMCVNTEW
GAFGDSGELD EFLLEYDRLV DESSANPGQQ LYEKLIGGKY MGELVRLVLL RLVDENLHFH
GEASEQLRTR GAFETRFVSQ VESDTGDRKQ IYNILSTLGL RPSTTDCDIV RRACESVSTR
AAHMCSAGLA GVINRMRESR SEDVMRITVG VDGSVYKLHP SFKERFHASV RRLTPSCEIT
FIESEEGSGR GAALVSAVAC KKACMLGQ*
speed 1.01 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project