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mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 0.999998239236368 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
| Summary |
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hyperlink | ||||||||||||
| analysed issue | analysis result | |||||||||||||
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| name of alteration | no title | |||||||||||||
| alteration (phys. location) | chr9:18950787G>AN/A show variant in all transcripts IGV | |||||||||||||
| HGNC symbol | SAXO1 | |||||||||||||
| Ensembl transcript ID | ENST00000542071 | |||||||||||||
| Genbank transcript ID | N/A | |||||||||||||
| UniProt peptide | Q8IYX7 | |||||||||||||
| alteration type | single base exchange | |||||||||||||
| alteration region | 5'UTR | |||||||||||||
| DNA changes | cDNA.532C>T g.82465C>T | |||||||||||||
| AA changes | N/A | |||||||||||||
| position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
| frameshift | N/A | |||||||||||||
| known variant | Reference ID: rs6475273
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| regulatory features | H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation | |||||||||||||
| phyloP / phastCons |
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| splice sites | splice site change before start ATG (at aa -63) |
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| distance from splice site | 32 | |||||||||||||
| Kozak consensus sequence altered? | no | |||||||||||||
| conservation protein level for non-synonymous changes | N/A | |||||||||||||
| protein features | no protein features affected | |||||||||||||
| length of protein | N/A | |||||||||||||
| AA sequence altered | N/A | |||||||||||||
| position of stopcodon in wt / mu CDS | N/A | |||||||||||||
| position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
| position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
| poly(A) signal | N/A | |||||||||||||
| conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
| position of start ATG in wt / mu cDNA | 719 / 719 | |||||||||||||
| chromosome | 9 | |||||||||||||
| strand | -1 | |||||||||||||
| last intron/exon boundary | 564 | |||||||||||||
| theoretical NMD boundary in CDS | cannot be calculated, too little distance between start ATG and last intron/exon boundary | |||||||||||||
| length of CDS | 849 | |||||||||||||
| coding sequence (CDS) position | N/A | |||||||||||||
| cDNA position (for ins/del: last normal base / first normal base) | 532 | |||||||||||||
| gDNA position (for ins/del: last normal base / first normal base) | 82465 | |||||||||||||
| chromosomal position (for ins/del: last normal base / first normal base) | 18950787 | |||||||||||||
| original gDNA sequence snippet | GGCGGGAGTACCAGAAAGGGCCTATACCAATGGAAGGCCTG | |||||||||||||
| altered gDNA sequence snippet | GGCGGGAGTACCAGAAAGGGTCTATACCAATGGAAGGCCTG | |||||||||||||
| original cDNA sequence snippet | GGCGGGAGTACCAGAAAGGGCCTATACCAATGGAAGGCCTG | |||||||||||||
| altered cDNA sequence snippet | GGCGGGAGTACCAGAAAGGGTCTATACCAATGGAAGGCCTG | |||||||||||||
| wildtype AA sequence | MPKLCNIPLE DVTNYKMSYV AHPVEKRFVH EAEKFRPCEI PFESLTTQKQ SYRGLMGEPA KSLKPLARPP GLDMPFCNTT EFRDKYQAWP MPRMFSKAPI TYVPPEDRMD LLTTVQAHYT CPKGAPAQSC RPALQIKKCG RFEGSSTTKD DYKQWSSMRT EPVKPVPQLD LPTEPLDCLT TTRAHYVPHL PINTKSCKPH WSGPRGNVPV ESQTTYTISF TPKEMGRCLA SYPEPPGYTF EEVDALGHRI YKPVSQAGSQ QSSHLSVDDS ENPNQRELEV LA* | |||||||||||||
| mutated AA sequence | N/A | |||||||||||||
| speed | 0.83 s | |||||||||||||