Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

polymorphism

 Model: simple_aae, prob: 0.999994611528625 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr6:74497009A>GN/A show variant in all transcripts   IGV
HGNC symbol CD109
Ensembl transcript ID ENST00000422508
Genbank transcript ID NM_001159588
UniProt peptide Q6YHK3
alteration type single base exchange
alteration region CDS
DNA changes c.2159A>G
cDNA.2590A>G
g.91502A>G
AA changes N720S Score: 46 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 720
frameshift no
known variant Reference ID: rs2351528
databasehomozygous (G/G)heterozygousallele carriers
1000G36611331499
ExAC84861579524281
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)1.8890.772
0.3120.815
(flanking)0.6580.916
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor increased91501wt: 0.80 / mu: 1.00wt: CTTCAAATGAAATAA
mu: CTTCAAGTGAAATAA		 TCAA|atga
Donor increased91496wt: 0.60 / mu: 0.97wt: AATGACTTCAAATGA
mu: AATGACTTCAAGTGA		 TGAC|ttca
Acc gained915010.36mu: TTGATATTCTAATGACTTCAAGTGAAATAAATGCCACAGGC tcaa|GTGA
distance from splice site 53
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      720KSDKFDILMTSNEINATGHQQTLL
mutated  all conserved    720KSDKFDILMTSSEINATGHQQTL
Ptroglodytes  all conserved  ENSPTRG00000018349  797KSDKFDILMTSSEINATGHQQTL
Mmulatta  all conserved  ENSMMUG00000017806  796KSDKFDILMTSSEINATGHQQTI
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000046186  799ESDSFDILMTSNDTNGTIYRKTV
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  all conserved  ENSDARG00000060609  830ESGMFEFVSTDSADFSVANVRKV
Dmelanogaster  no homologue    
Celegans  not conserved  ZK337.1  861KDSGYDLLKKDGTVVRRDEVGQQNVR
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
789789CONFLICTK -> E (in Ref. 4; BAG36395).might get lost (downstream of altered splice site)
803803CONFLICTG -> S (in Ref. 2; AAN78483).might get lost (downstream of altered splice site)
921924CROSSLNKIsoglutamyl cysteine thioester (Cys-Gln) (By similarity).might get lost (downstream of altered splice site)
10461046CONFLICTV -> A (in Ref. 5; ABQ66266).might get lost (downstream of altered splice site)
10861086CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
14181418CONFLICTD -> N (in Ref. 4; BAG53987).might get lost (downstream of altered splice site)
14201420LIPIDGPI-anchor amidated alanine (Potential).might get lost (downstream of altered splice site)
14211445PROPEPRemoved in mature form (Potential). /FTId=PRO_0000255946.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 4107 / 4107
position (AA) of stopcodon in wt / mu AA sequence 1369 / 1369
position of stopcodon in wt / mu cDNA 4538 / 4538
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 432 / 432
chromosome 6
strand 1
last intron/exon boundary 4363
theoretical NMD boundary in CDS 3881
length of CDS 4107
coding sequence (CDS) position 2159
cDNA position
(for ins/del: last normal base / first normal base)		 2590
gDNA position
(for ins/del: last normal base / first normal base)		 91502
chromosomal position
(for ins/del: last normal base / first normal base)		 74497009
original gDNA sequence snippet TGATATTCTAATGACTTCAAATGAAATAAATGCCACAGGCC
altered gDNA sequence snippet TGATATTCTAATGACTTCAAGTGAAATAAATGCCACAGGCC
original cDNA sequence snippet TGATATTCTAATGACTTCAAATGAAATAAATGCCACAGGCC
altered cDNA sequence snippet TGATATTCTAATGACTTCAAGTGAAATAAATGCCACAGGCC
wildtype AA sequence MQGPPLLTAA HLLCVCTAAL AVAPGPRFLV TAPGIIRPGG NVTIGVELLE HCPSQVTVKA
ELLKTASNLT VSVLEAEGVF EKGSFKTLTL PSDPKSNLIQ QWLSQQSDLG VISKTFQLSS
HPILGDWSIQ VQVNDQTYYQ SFQVSEYVLP KFEVTLQTPL YCSMNSKHLN GTITAKYTYG
KPVKGDVTLT FLPLSFWGKK KNITKTFKIN GSANFSFNDE EMKNVMDSSN GLSEYLDLSS
PGPVEILTTV TESVTGISRN VSTNVFFKQH DYIIEFFDYT TVLKPSLNFT ATVKVTRADG
NQLTLEERRN NVVITVTQRN YTEYWSGSNS GNQKMEAVQK INYTVPQSGT FKIEFPILED
SSELQLKAYF LGSKSSMAVH SLFKSPSKTY IQLKTRDENI KVGSPFELVV SGNKRLKELS
YMVVSRGQLV AVGKQNSTMF SLTPENSWTP KACVIVYYIE DDGEIISDVL KIPVQLVFKN
KIKLYWSKVK AEPSEKVSLR ISVTQPDSIV GIVAVDKSVN LMNASNDITM ENVVHELELY
NTGYYLGMFM NSFAVFQECG LWVLTDANLT KDYIDGVYDN AEYAERFMEE NEGHIVDIHD
FSLGSSPHVR KHFPETWIWL DTNMGYRIYQ EFEVTVPDSI TSWVATGFVI SEDLGLGLTT
TPVELQAFQP FFIFLNLPYS VIRGEEFALE ITIFNYLKDA TEVKVIIEKS DKFDILMTSN
EINATGHQQT LLVPSEDGAT VLFPIRPTHL GEIPITVTAL SPTASDAVTQ MILVKAEGIE
KSYSQSILLD LTDNRLQSTL KTLSFSFPPN TVTGSERVQI TAIGDVLGPS INGLASLIRM
PYGCGEQNMI NFAPNIYILD YLTKKKQLTD NLKEKALSFM RQGYQRELLY QREDGSFSAF
GNYDPSGSTW LSAFVLRCFL EADPYIDIDQ NVLHRTYTWL KGHQKSNGEF WDPGRVIHSE
LQGGNKSPVT LTAYIVTSLL GYRKYQPNID VQESIHFLES EFSRGISDNY TLALITYALS
SVGSPKAKEA LNMLTWRAEQ EGGMQFWVSS ESKLSDSWQP RSLDIEVAAY ALLSHFLQFQ
TSEGIPIMRW LSRQRNSLGG FASTQDTTVA LKALSEFAAL MNTERTNIQV TVTGPSSPSP
VKFLIDTHNR LLLQTAELAV VQPTAVNISA NGFGFAICQL NVVYNVKASG SSRRRRSIQN
QEAFDLDVAV KENKDDLNHV DLNVCTSFSG PGRSGMALME VNLLSGFMVP SEAISLSETV
KKVEYDHGKL NLYLDSVNET QFCVNIPAVR NFKVSNTQDA SVSIVDYYEP RRQAVRSYNS
EVKLSSCDLC SDVQGCRPCE DGASGSHHHS SVIFIFCFKL LYFMELWL*
mutated AA sequence MQGPPLLTAA HLLCVCTAAL AVAPGPRFLV TAPGIIRPGG NVTIGVELLE HCPSQVTVKA
ELLKTASNLT VSVLEAEGVF EKGSFKTLTL PSDPKSNLIQ QWLSQQSDLG VISKTFQLSS
HPILGDWSIQ VQVNDQTYYQ SFQVSEYVLP KFEVTLQTPL YCSMNSKHLN GTITAKYTYG
KPVKGDVTLT FLPLSFWGKK KNITKTFKIN GSANFSFNDE EMKNVMDSSN GLSEYLDLSS
PGPVEILTTV TESVTGISRN VSTNVFFKQH DYIIEFFDYT TVLKPSLNFT ATVKVTRADG
NQLTLEERRN NVVITVTQRN YTEYWSGSNS GNQKMEAVQK INYTVPQSGT FKIEFPILED
SSELQLKAYF LGSKSSMAVH SLFKSPSKTY IQLKTRDENI KVGSPFELVV SGNKRLKELS
YMVVSRGQLV AVGKQNSTMF SLTPENSWTP KACVIVYYIE DDGEIISDVL KIPVQLVFKN
KIKLYWSKVK AEPSEKVSLR ISVTQPDSIV GIVAVDKSVN LMNASNDITM ENVVHELELY
NTGYYLGMFM NSFAVFQECG LWVLTDANLT KDYIDGVYDN AEYAERFMEE NEGHIVDIHD
FSLGSSPHVR KHFPETWIWL DTNMGYRIYQ EFEVTVPDSI TSWVATGFVI SEDLGLGLTT
TPVELQAFQP FFIFLNLPYS VIRGEEFALE ITIFNYLKDA TEVKVIIEKS DKFDILMTSS
EINATGHQQT LLVPSEDGAT VLFPIRPTHL GEIPITVTAL SPTASDAVTQ MILVKAEGIE
KSYSQSILLD LTDNRLQSTL KTLSFSFPPN TVTGSERVQI TAIGDVLGPS INGLASLIRM
PYGCGEQNMI NFAPNIYILD YLTKKKQLTD NLKEKALSFM RQGYQRELLY QREDGSFSAF
GNYDPSGSTW LSAFVLRCFL EADPYIDIDQ NVLHRTYTWL KGHQKSNGEF WDPGRVIHSE
LQGGNKSPVT LTAYIVTSLL GYRKYQPNID VQESIHFLES EFSRGISDNY TLALITYALS
SVGSPKAKEA LNMLTWRAEQ EGGMQFWVSS ESKLSDSWQP RSLDIEVAAY ALLSHFLQFQ
TSEGIPIMRW LSRQRNSLGG FASTQDTTVA LKALSEFAAL MNTERTNIQV TVTGPSSPSP
VKFLIDTHNR LLLQTAELAV VQPTAVNISA NGFGFAICQL NVVYNVKASG SSRRRRSIQN
QEAFDLDVAV KENKDDLNHV DLNVCTSFSG PGRSGMALME VNLLSGFMVP SEAISLSETV
KKVEYDHGKL NLYLDSVNET QFCVNIPAVR NFKVSNTQDA SVSIVDYYEP RRQAVRSYNS
EVKLSSCDLC SDVQGCRPCE DGASGSHHHS SVIFIFCFKL LYFMELWL*
speed 0.18 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project