Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

polymorphism

 Model: simple_aae, prob: 0.999955033248627 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr6:46827073A>GN/A show variant in all transcripts   IGV
HGNC symbol ADGRF5
Ensembl transcript ID ENST00000545669
Genbank transcript ID N/A
UniProt peptide Q8IZF2
alteration type single base exchange
alteration region CDS
DNA changes c.854T>C
cDNA.1179T>C
g.95608T>C
AA changes M285T Score: 81 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 285
frameshift no
known variant Reference ID: rs547499
databasehomozygous (G/G)heterozygousallele carriers
1000G7799981777
ExAC26418-200696349
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.5030.001
0.9230.276
(flanking)0.6680.396
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased95612wt: 0.9673 / mu: 0.9937 (marginal change - not scored)wt: ATGGTAATCAAGTCC
mu: ACGGTAATCAAGTCC		 GGTA|atca
Donor increased95608wt: 0.85 / mu: 0.94wt: CAGCATGGTAATCAA
mu: CAGCACGGTAATCAA		 GCAT|ggta
Donor increased95599wt: 0.45 / mu: 0.58wt: GCAGATGAGCAGCAT
mu: GCAGATGAGCAGCAC		 AGAT|gagc
distance from splice site 188
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      285SFSQTNVQMSSMVIKSSHPETYQQ
mutated  not conserved    285SFSQTNVQMSSTVIKSSHPETYQ
Ptroglodytes  all identical  ENSPTRG00000018240  856SFSQTNVQMSSMVIKSSHPKTYQ
Mmulatta  all identical  ENSMMUG00000023002  852SFFRTNVQMSSMVIKSSHPKTYQ
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000056492  855FLAHPNVQMKSMVIKRGHPQIYQ
Ggallus  all identical  ENSGALG00000016718  798HLSTETLELQGMVVTEHSHADYN
Trubripes  not conserved  ENSTRUG00000017329  1200EIVTERIKLN----KTSFDTSFA
Drerio  no homologue    
Dmelanogaster  no alignment  FBgn0039818  n/a
Celegans  no homologue    
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
221006TOPO_DOMExtracellular (Potential).lost
267368DOMAINIg-like 1.lost
301301CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
315315CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
328328CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
369466DOMAINIg-like 2.might get lost (downstream of altered splice site)
398398CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
471561DOMAINIg-like 3.might get lost (downstream of altered splice site)
472472CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
487487CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
505505CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
540540CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
573573CONFLICTV -> I (in Ref. 7; CAB43394).might get lost (downstream of altered splice site)
627627CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
649649CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
666666CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
820820CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
931931CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
9511002DOMAINGPS.might get lost (downstream of altered splice site)
963963CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
982982CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
990991SITECleavage (By similarity).might get lost (downstream of altered splice site)
10071027TRANSMEMHelical; Name=1; (Potential).might get lost (downstream of altered splice site)
10281053TOPO_DOMCytoplasmic (Potential).might get lost (downstream of altered splice site)
10541074TRANSMEMHelical; Name=2; (Potential).might get lost (downstream of altered splice site)
10751075CONFLICTQ -> R (in Ref. 5; AL832125).might get lost (downstream of altered splice site)
10751090TOPO_DOMExtracellular (Potential).might get lost (downstream of altered splice site)
10911111TRANSMEMHelical; Name=3; (Potential).might get lost (downstream of altered splice site)
11121128TOPO_DOMCytoplasmic (Potential).might get lost (downstream of altered splice site)
11291149TRANSMEMHelical; Name=4; (Potential).might get lost (downstream of altered splice site)
11501173TOPO_DOMExtracellular (Potential).might get lost (downstream of altered splice site)
11741194TRANSMEMHelical; Name=5; (Potential).might get lost (downstream of altered splice site)
11951220TOPO_DOMCytoplasmic (Potential).might get lost (downstream of altered splice site)
12211241TRANSMEMHelical; Name=6; (Potential).might get lost (downstream of altered splice site)
12421244TOPO_DOMExtracellular (Potential).might get lost (downstream of altered splice site)
12451265TRANSMEMHelical; Name=7; (Potential).might get lost (downstream of altered splice site)
12661346TOPO_DOMCytoplasmic (Potential).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2313 / 2313
position (AA) of stopcodon in wt / mu AA sequence 771 / 771
position of stopcodon in wt / mu cDNA 2638 / 2638
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 326 / 326
chromosome 6
strand -1
last intron/exon boundary 2641
theoretical NMD boundary in CDS 2265
length of CDS 2313
coding sequence (CDS) position 854
cDNA position
(for ins/del: last normal base / first normal base)		 1179
gDNA position
(for ins/del: last normal base / first normal base)		 95608
chromosomal position
(for ins/del: last normal base / first normal base)		 46827073
original gDNA sequence snippet TAATGTGCAGATGAGCAGCATGGTAATCAAGTCCAGCCACC
altered gDNA sequence snippet TAATGTGCAGATGAGCAGCACGGTAATCAAGTCCAGCCACC
original cDNA sequence snippet TAATGTGCAGATGAGCAGCATGGTAATCAAGTCCAGCCACC
altered cDNA sequence snippet TAATGTGCAGATGAGCAGCACGGTAATCAAGTCCAGCCACC
wildtype AA sequence MVDPLEATVS CSGSHHIKCC IEEDGDYKVT FHTGSSSLPA AKEVNKKQVC YKHNFNASSV
SWCSKTVDVC CHFTNAANNS VWSPSMKLNL VPGENITCQD PVIGVGEPGK VIQKLCRFSN
VPSSPESPIG GTITYKCVGS QWEEKRNDCI SAPINSLLQM AKALIKSPSQ DEMLPTYLKD
LSISIDKAEH EISSSPGSLG AIINILDLLS TVPTQVNSEM MTHVLSTVNV ILGKPVLNTW
KVLQQQWTNQ SSQLLHSVER FSQALQSGDS PPLSFSQTNV QMSSMVIKSS HPETYQQRFV
FPYFDLWGNV VIDKSYLENL QSDSSIVTMA FPTLQAILAQ DIQENNFAES LVMTTTVSHN
TTMPFRISMT FKNNSPSGGE TKCVFWNFRL ANNTGGWDSS GCYVEEGDGD NVTCICDHLT
SFSILMSPDS PDPSSLLGIL LDIISYVGVG FSILSLAACL VVEAVVWKSV TKNRTSYMRH
TCIVNIAASL LVANTWFIVV AAIQDNRYIL CKTACVAATF FIHFFYLSVF FWMLTLGLML
FYRLVFILHE TSRSTQKAIA FCLGYGCPLA ISVITLGATQ PREVYTRKNV CWLNWEDTKA
LLAFAIPALI IVVVNITITI VVITKILRPS IGDKPCKQEK SSLFQISKSI GVLTPLLGLT
WGFGLTTVFP GTNLVFHIIF AILNVFQGLF ILLFGCLWDL KVQEALLNKF SLSRWSSQHS
KSTSLGSSTP VFSMSSPISR RFNNLFGKTA APKIPPGHDG NLVSGGSSAI *
mutated AA sequence MVDPLEATVS CSGSHHIKCC IEEDGDYKVT FHTGSSSLPA AKEVNKKQVC YKHNFNASSV
SWCSKTVDVC CHFTNAANNS VWSPSMKLNL VPGENITCQD PVIGVGEPGK VIQKLCRFSN
VPSSPESPIG GTITYKCVGS QWEEKRNDCI SAPINSLLQM AKALIKSPSQ DEMLPTYLKD
LSISIDKAEH EISSSPGSLG AIINILDLLS TVPTQVNSEM MTHVLSTVNV ILGKPVLNTW
KVLQQQWTNQ SSQLLHSVER FSQALQSGDS PPLSFSQTNV QMSSTVIKSS HPETYQQRFV
FPYFDLWGNV VIDKSYLENL QSDSSIVTMA FPTLQAILAQ DIQENNFAES LVMTTTVSHN
TTMPFRISMT FKNNSPSGGE TKCVFWNFRL ANNTGGWDSS GCYVEEGDGD NVTCICDHLT
SFSILMSPDS PDPSSLLGIL LDIISYVGVG FSILSLAACL VVEAVVWKSV TKNRTSYMRH
TCIVNIAASL LVANTWFIVV AAIQDNRYIL CKTACVAATF FIHFFYLSVF FWMLTLGLML
FYRLVFILHE TSRSTQKAIA FCLGYGCPLA ISVITLGATQ PREVYTRKNV CWLNWEDTKA
LLAFAIPALI IVVVNITITI VVITKILRPS IGDKPCKQEK SSLFQISKSI GVLTPLLGLT
WGFGLTTVFP GTNLVFHIIF AILNVFQGLF ILLFGCLWDL KVQEALLNKF SLSRWSSQHS
KSTSLGSSTP VFSMSSPISR RFNNLFGKTA APKIPPGHDG NLVSGGSSAI *
speed 1.05 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project