Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

polymorphism

 Model: simple_aae, prob: 0.999999999999888 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr8:7308386T>CN/A show variant in all transcripts   IGV
HGNC symbol SPAG11B
Ensembl transcript ID ENST00000458665
Genbank transcript ID NM_058207
UniProt peptide Q08648
alteration type single base exchange
alteration region CDS
DNA changes c.92A>G
cDNA.144A>G
g.12811A>G
AA changes H31R Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 31
frameshift no
known variant Reference ID: rs1042797
databasehomozygous (C/C)heterozygousallele carriers
1000G---
ExAC14826311517941
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.7340.005
-0.2930.01
(flanking)-0.1340.086
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc marginally increased12816wt: 0.2915 / mu: 0.2977 (marginal change - not scored)wt: GAAATACCATCTGCCATATGCAGCAAGGGATCTGCAGACTT
mu: GAAATACCATCTGCCGTATGCAGCAAGGGATCTGCAGACTT		 atgc|AGCA
distance from splice site 37
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      31DVPPGIRNTICHMQQGICRLFFCH
mutated  not conserved    31DVPPGIRNTICRMQQGICRLFFC
Ptroglodytes  not conserved  ENSPTRG00000019963  84DVPLGIRNTICRMQQGICRLFFC
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000059463  81PNYQIVNCKKSEGQCQEY-C
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 243 / 243
position (AA) of stopcodon in wt / mu AA sequence 81 / 81
position of stopcodon in wt / mu cDNA 295 / 295
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 53 / 53
chromosome 8
strand -1
last intron/exon boundary 108
theoretical NMD boundary in CDS 5
length of CDS 243
coding sequence (CDS) position 92
cDNA position
(for ins/del: last normal base / first normal base)		 144
gDNA position
(for ins/del: last normal base / first normal base)		 12811
chromosomal position
(for ins/del: last normal base / first normal base)		 7308386
original gDNA sequence snippet AATTAGAAATACCATCTGCCATATGCAGCAAGGGATCTGCA
altered gDNA sequence snippet AATTAGAAATACCATCTGCCGTATGCAGCAAGGGATCTGCA
original cDNA sequence snippet AATTAGAAATACCATCTGCCATATGCAGCAAGGGATCTGCA
altered cDNA sequence snippet AATTAGAAATACCATCTGCCGTATGCAGCAAGGGATCTGCA
wildtype AA sequence MKVFFLFAVL FCLVQTNSGD VPPGIRNTIC HMQQGICRLF FCHSGEKKRD ICSDPWNRCC
VSNTDEEGKE KPEMDGRSGI *
mutated AA sequence MKVFFLFAVL FCLVQTNSGD VPPGIRNTIC RMQQGICRLF FCHSGEKKRD ICSDPWNRCC
VSNTDEEGKE KPEMDGRSGI *
speed 0.91 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project