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mutation t@sting |
documentation |
Prediction |
polymorphism |
Model: without_aae, prob: 0.999998699996044 (classification due to TGP/ExAC, real probability is shown anyway) (explain) | ||||||||||||
| Summary |
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hyperlink | ||||||||||||
| analysed issue | analysis result | |||||||||||||
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| name of alteration | no title | |||||||||||||
| alteration (phys. location) | chr9:114359624C>AN/A show variant in all transcripts IGV | |||||||||||||
| HGNC symbol | PTGR1 | |||||||||||||
| Ensembl transcript ID | ENST00000238248 | |||||||||||||
| Genbank transcript ID | N/A | |||||||||||||
| UniProt peptide | N/A | |||||||||||||
| alteration type | single base exchange | |||||||||||||
| alteration region | 5'UTR | |||||||||||||
| DNA changes | cDNA.342G>T g.2512G>T | |||||||||||||
| AA changes | N/A | |||||||||||||
| position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
| frameshift | N/A | |||||||||||||
| known variant | Reference ID: rs1053959
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| regulatory features | H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation | |||||||||||||
| phyloP / phastCons |
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| splice sites | no abrogation of potential splice sites | |||||||||||||
| distance from splice site | 28 | |||||||||||||
| Kozak consensus sequence altered? | no | |||||||||||||
| conservation protein level for non-synonymous changes | N/A | |||||||||||||
| protein features | N/A | |||||||||||||
| length of protein | N/A | |||||||||||||
| AA sequence altered | N/A | |||||||||||||
| position of stopcodon in wt / mu CDS | N/A | |||||||||||||
| position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
| position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
| poly(A) signal | N/A | |||||||||||||
| conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
| position of start ATG in wt / mu cDNA | 633 / 633 | |||||||||||||
| chromosome | 9 | |||||||||||||
| strand | -1 | |||||||||||||
| last intron/exon boundary | 1143 | |||||||||||||
| theoretical NMD boundary in CDS | 460 | |||||||||||||
| length of CDS | 534 | |||||||||||||
| coding sequence (CDS) position | N/A | |||||||||||||
| cDNA position (for ins/del: last normal base / first normal base) | 342 | |||||||||||||
| gDNA position (for ins/del: last normal base / first normal base) | 2512 | |||||||||||||
| chromosomal position (for ins/del: last normal base / first normal base) | 114359624 | |||||||||||||
| original gDNA sequence snippet | GTGACTTTGAGTTGAAGACAGCTGAGCTCCCACCCTTAAAA | |||||||||||||
| altered gDNA sequence snippet | GTGACTTTGAGTTGAAGACATCTGAGCTCCCACCCTTAAAA | |||||||||||||
| original cDNA sequence snippet | GTGACTTTGAGTTGAAGACAGCTGAGCTCCCACCCTTAAAA | |||||||||||||
| altered cDNA sequence snippet | GTGACTTTGAGTTGAAGACATCTGAGCTCCCACCCTTAAAA | |||||||||||||
| wildtype AA sequence | MPGLTAYFGL LEICGVKGGE TVMVNAAAGA VGSVVGQIAK LKGCKVVGAV GSDEKVAYLQ KLGFDVVFNY KTVESLEETL KKASPDGYDC YFDNVGGEFS NTVIGQMKKF GRIAICGAIS TYNRTGPLPP GPPPEIVIYQ ELRMEAFVVY RWQGDARQKA LKDLLKWVLE LPYFVID* | |||||||||||||
| mutated AA sequence | N/A | |||||||||||||
| speed | 0.11 s | |||||||||||||