Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 5 transcript(s)...
Querying Taster for transcript #1: ENST00000368373
Querying Taster for transcript #2: ENST00000327247
Querying Taster for transcript #3: ENST00000427500
Querying Taster for transcript #4: ENST00000536770
Querying Taster for transcript #5: ENST00000428024
MT speed 3.74 s - this script 4.505495 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
GBAdisease_causing_automatic0.999999791904194simple_aaeaffected0G85Esingle base exchangers77829017show file
GBAdisease_causing_automatic0.999999791904194simple_aaeaffected0G85Esingle base exchangers77829017show file
GBAdisease_causing_automatic0.999999791904194simple_aaeaffected0G85Esingle base exchangers77829017show file
GBAdisease_causing_automatic1without_aaeaffected0single base exchangers77829017show file
GBAdisease_causing_automatic1without_aaeaffected0single base exchangers77829017show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999791904194 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM960692)
  • known disease mutation: rs4296 (pathogenic)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr1:155209730C>TN/A show variant in all transcripts   IGV
HGNC symbol GBA
Ensembl transcript ID ENST00000368373
Genbank transcript ID NM_000157
UniProt peptide P04062
alteration type single base exchange
alteration region CDS
DNA changes c.254G>A
cDNA.376G>A
g.4924G>A
AA changes G85E Score: 98 explain score(s)
position(s) of altered AA
if AA alteration in CDS
85
frameshift no
known variant Reference ID: rs77829017
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs4296 (pathogenic for Gaucher's disease, type 1|Gaucher disease) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)

known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3370.843
4.2430.995
(flanking)4.2430.995
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased4917wt: 0.9183 / mu: 0.9459 (marginal change - not scored)wt: GTACACGCAGTGGGC
mu: GTACACGCAGTGAGC
 ACAC|gcag
Donor increased4920wt: 0.37 / mu: 0.90wt: CACGCAGTGGGCGAC
mu: CACGCAGTGAGCGAC
 CGCA|gtgg
Donor marginally increased4924wt: 0.9316 / mu: 0.9975 (marginal change - not scored)wt: CAGTGGGCGACGGAT
mu: CAGTGAGCGACGGAT
 GTGG|gcga
Donor gained49280.33mu: GAGCGACGGATGGAG GCGA|cgga
distance from splice site 54
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      85GTFSRYESTRSGRRMELSMGPIQA
mutated  not conserved    85GTFSRYESTRSERRMELSMGPIQ
Ptroglodytes  all identical  ENSPTRG00000001416  85GTFSRYESTRSGRRMELSMGTIQ
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000028048  65STRRGRRMELSVGAIQ
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000010884  71HFSSYLSSMSGSRLEAGQGQVQ
Drerio  all identical  ENSDARG00000076058  67GQFLSYVSNKAGSRLMESQGQFQ
Dmelanogaster  all identical  FBgn0051148  71GLRFSTTSDKFGKEEKFTVQDYVEPTQ
Celegans  all identical  Y4C6B.6  68TTSRNGKRMNRS----E
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
8894STRANDmight get lost (downstream of altered splice site)
9698STRANDmight get lost (downstream of altered splice site)
9898CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
103116STRANDmight get lost (downstream of altered splice site)
119123STRANDmight get lost (downstream of altered splice site)
126133HELIXmight get lost (downstream of altered splice site)
137148HELIXmight get lost (downstream of altered splice site)
150153TURNmight get lost (downstream of altered splice site)
157163STRANDmight get lost (downstream of altered splice site)
166170STRANDmight get lost (downstream of altered splice site)
177179STRANDmight get lost (downstream of altered splice site)
185185CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
190193HELIXmight get lost (downstream of altered splice site)
196206HELIXmight get lost (downstream of altered splice site)
212218STRANDmight get lost (downstream of altered splice site)
222224HELIXmight get lost (downstream of altered splice site)
225227STRANDmight get lost (downstream of altered splice site)
227227CONFLICTN -> R (in Ref. 5; BAA02546).might get lost (downstream of altered splice site)
229233STRANDmight get lost (downstream of altered splice site)
235238STRANDmight get lost (downstream of altered splice site)
243261HELIXmight get lost (downstream of altered splice site)
267271STRANDmight get lost (downstream of altered splice site)
274274ACT_SITEProton donor.might get lost (downstream of altered splice site)
275279HELIXmight get lost (downstream of altered splice site)
284286STRANDmight get lost (downstream of altered splice site)
292301HELIXmight get lost (downstream of altered splice site)
303308HELIXmight get lost (downstream of altered splice site)
309309CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
311314TURNmight get lost (downstream of altered splice site)
315323STRANDmight get lost (downstream of altered splice site)
324326HELIXmight get lost (downstream of altered splice site)
329335HELIXmight get lost (downstream of altered splice site)
338341HELIXmight get lost (downstream of altered splice site)
346352STRANDmight get lost (downstream of altered splice site)
354356HELIXmight get lost (downstream of altered splice site)
359369HELIXmight get lost (downstream of altered splice site)
373381STRANDmight get lost (downstream of altered splice site)
379379ACT_SITENucleophile.might get lost (downstream of altered splice site)
379379MUTAGENE->G: Decreases activity 1000-fold.might get lost (downstream of altered splice site)
386388STRANDmight get lost (downstream of altered splice site)
396411HELIXmight get lost (downstream of altered splice site)
414424STRANDmight get lost (downstream of altered splice site)
426428STRANDmight get lost (downstream of altered splice site)
440444STRANDmight get lost (downstream of altered splice site)
445447HELIXmight get lost (downstream of altered splice site)
449452STRANDmight get lost (downstream of altered splice site)
454463HELIXmight get lost (downstream of altered splice site)
470470CONFLICTS -> I (in Ref. 15; AA sequence).might get lost (downstream of altered splice site)
471479STRANDmight get lost (downstream of altered splice site)
482489STRANDmight get lost (downstream of altered splice site)
495501STRANDmight get lost (downstream of altered splice site)
501501CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
503505STRANDmight get lost (downstream of altered splice site)
507513STRANDmight get lost (downstream of altered splice site)
514516TURNmight get lost (downstream of altered splice site)
517523STRANDmight get lost (downstream of altered splice site)
527533STRANDmight get lost (downstream of altered splice site)
534534CONFLICTR -> H (in Ref. 1; AAA35873).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1611 / 1611
position (AA) of stopcodon in wt / mu AA sequence 537 / 537
position of stopcodon in wt / mu cDNA 1733 / 1733
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 123 / 123
chromosome 1
strand -1
last intron/exon boundary 1628
theoretical NMD boundary in CDS 1455
length of CDS 1611
coding sequence (CDS) position 254
cDNA position
(for ins/del: last normal base / first normal base)
376
gDNA position
(for ins/del: last normal base / first normal base)
4924
chromosomal position
(for ins/del: last normal base / first normal base)
155209730
original gDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered gDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
original cDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered cDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
wildtype AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSGRRMEL SMGPIQANHT GTGLLLTLQP EQKFQKVKGF
GGAMTDAAAL NILALSPPAQ NLLLKSYFSE EGIGYNIIRV PMASCDFSIR TYTYADTPDD
FQLHNFSLPE EDTKLKIPLI HRALQLAQRP VSLLASPWTS PTWLKTNGAV NGKGSLKGQP
GDIYHQTWAR YFVKFLDAYA EHKLQFWAVT AENEPSAGLL SGYPFQCLGF TPEHQRDFIA
RDLGPTLANS THHNVRLLML DDQRLLLPHW AKVVLTDPEA AKYVHGIAVH WYLDFLAPAK
ATLGETHRLF PNTMLFASEA CVGSKFWEQS VRLGSWDRGM QYSHSIITNL LYHVVGWTDW
NLALNPEGGP NWVRNFVDSP IIVDITKDTF YKQPMFYHLG HFSKFIPEGS QRVGLVASQK
NDLDAVALMH PDGSAVVVVL NRSSKDVPLT IKDPAVGFLE TISPGYSIHT YLWRRQ*
mutated AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSERRMEL SMGPIQANHT GTGLLLTLQP EQKFQKVKGF
GGAMTDAAAL NILALSPPAQ NLLLKSYFSE EGIGYNIIRV PMASCDFSIR TYTYADTPDD
FQLHNFSLPE EDTKLKIPLI HRALQLAQRP VSLLASPWTS PTWLKTNGAV NGKGSLKGQP
GDIYHQTWAR YFVKFLDAYA EHKLQFWAVT AENEPSAGLL SGYPFQCLGF TPEHQRDFIA
RDLGPTLANS THHNVRLLML DDQRLLLPHW AKVVLTDPEA AKYVHGIAVH WYLDFLAPAK
ATLGETHRLF PNTMLFASEA CVGSKFWEQS VRLGSWDRGM QYSHSIITNL LYHVVGWTDW
NLALNPEGGP NWVRNFVDSP IIVDITKDTF YKQPMFYHLG HFSKFIPEGS QRVGLVASQK
NDLDAVALMH PDGSAVVVVL NRSSKDVPLT IKDPAVGFLE TISPGYSIHT YLWRRQ*
speed 0.73 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999791904194 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM960692)
  • known disease mutation: rs4296 (pathogenic)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr1:155209730C>TN/A show variant in all transcripts   IGV
HGNC symbol GBA
Ensembl transcript ID ENST00000327247
Genbank transcript ID NM_001005741
UniProt peptide P04062
alteration type single base exchange
alteration region CDS
DNA changes c.254G>A
cDNA.487G>A
g.4924G>A
AA changes G85E Score: 98 explain score(s)
position(s) of altered AA
if AA alteration in CDS
85
frameshift no
known variant Reference ID: rs77829017
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs4296 (pathogenic for Gaucher's disease, type 1|Gaucher disease) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)

known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3370.843
4.2430.995
(flanking)4.2430.995
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased4917wt: 0.9183 / mu: 0.9459 (marginal change - not scored)wt: GTACACGCAGTGGGC
mu: GTACACGCAGTGAGC
 ACAC|gcag
Donor increased4920wt: 0.37 / mu: 0.90wt: CACGCAGTGGGCGAC
mu: CACGCAGTGAGCGAC
 CGCA|gtgg
Donor marginally increased4924wt: 0.9316 / mu: 0.9975 (marginal change - not scored)wt: CAGTGGGCGACGGAT
mu: CAGTGAGCGACGGAT
 GTGG|gcga
Donor gained49280.33mu: GAGCGACGGATGGAG GCGA|cgga
distance from splice site 54
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      85GTFSRYESTRSGRRMELSMGPIQA
mutated  not conserved    85GTFSRYESTRSERRMELSMGPIQ
Ptroglodytes  all identical  ENSPTRG00000001416  85GTFSRYESTRSGRRMELSMGTIQ
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000028048  65STRRGRRMELSVGAIQ
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000010884  71HFSSYLSSMSGSRLEAGQGQVQ
Drerio  all identical  ENSDARG00000076058  67GQFLSYVSNKAGSRLMESQGQFQ
Dmelanogaster  all identical  FBgn0051148  71GLRFSTTSDKFGKEEKFTVQDYVEPTQ
Celegans  all identical  Y4C6B.6  68TTSRNGKRMNRS----E
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
8894STRANDmight get lost (downstream of altered splice site)
9698STRANDmight get lost (downstream of altered splice site)
9898CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
103116STRANDmight get lost (downstream of altered splice site)
119123STRANDmight get lost (downstream of altered splice site)
126133HELIXmight get lost (downstream of altered splice site)
137148HELIXmight get lost (downstream of altered splice site)
150153TURNmight get lost (downstream of altered splice site)
157163STRANDmight get lost (downstream of altered splice site)
166170STRANDmight get lost (downstream of altered splice site)
177179STRANDmight get lost (downstream of altered splice site)
185185CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
190193HELIXmight get lost (downstream of altered splice site)
196206HELIXmight get lost (downstream of altered splice site)
212218STRANDmight get lost (downstream of altered splice site)
222224HELIXmight get lost (downstream of altered splice site)
225227STRANDmight get lost (downstream of altered splice site)
227227CONFLICTN -> R (in Ref. 5; BAA02546).might get lost (downstream of altered splice site)
229233STRANDmight get lost (downstream of altered splice site)
235238STRANDmight get lost (downstream of altered splice site)
243261HELIXmight get lost (downstream of altered splice site)
267271STRANDmight get lost (downstream of altered splice site)
274274ACT_SITEProton donor.might get lost (downstream of altered splice site)
275279HELIXmight get lost (downstream of altered splice site)
284286STRANDmight get lost (downstream of altered splice site)
292301HELIXmight get lost (downstream of altered splice site)
303308HELIXmight get lost (downstream of altered splice site)
309309CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
311314TURNmight get lost (downstream of altered splice site)
315323STRANDmight get lost (downstream of altered splice site)
324326HELIXmight get lost (downstream of altered splice site)
329335HELIXmight get lost (downstream of altered splice site)
338341HELIXmight get lost (downstream of altered splice site)
346352STRANDmight get lost (downstream of altered splice site)
354356HELIXmight get lost (downstream of altered splice site)
359369HELIXmight get lost (downstream of altered splice site)
373381STRANDmight get lost (downstream of altered splice site)
379379ACT_SITENucleophile.might get lost (downstream of altered splice site)
379379MUTAGENE->G: Decreases activity 1000-fold.might get lost (downstream of altered splice site)
386388STRANDmight get lost (downstream of altered splice site)
396411HELIXmight get lost (downstream of altered splice site)
414424STRANDmight get lost (downstream of altered splice site)
426428STRANDmight get lost (downstream of altered splice site)
440444STRANDmight get lost (downstream of altered splice site)
445447HELIXmight get lost (downstream of altered splice site)
449452STRANDmight get lost (downstream of altered splice site)
454463HELIXmight get lost (downstream of altered splice site)
470470CONFLICTS -> I (in Ref. 15; AA sequence).might get lost (downstream of altered splice site)
471479STRANDmight get lost (downstream of altered splice site)
482489STRANDmight get lost (downstream of altered splice site)
495501STRANDmight get lost (downstream of altered splice site)
501501CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
503505STRANDmight get lost (downstream of altered splice site)
507513STRANDmight get lost (downstream of altered splice site)
514516TURNmight get lost (downstream of altered splice site)
517523STRANDmight get lost (downstream of altered splice site)
527533STRANDmight get lost (downstream of altered splice site)
534534CONFLICTR -> H (in Ref. 1; AAA35873).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1611 / 1611
position (AA) of stopcodon in wt / mu AA sequence 537 / 537
position of stopcodon in wt / mu cDNA 1844 / 1844
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 234 / 234
chromosome 1
strand -1
last intron/exon boundary 1739
theoretical NMD boundary in CDS 1455
length of CDS 1611
coding sequence (CDS) position 254
cDNA position
(for ins/del: last normal base / first normal base)
487
gDNA position
(for ins/del: last normal base / first normal base)
4924
chromosomal position
(for ins/del: last normal base / first normal base)
155209730
original gDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered gDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
original cDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered cDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
wildtype AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSGRRMEL SMGPIQANHT GTGLLLTLQP EQKFQKVKGF
GGAMTDAAAL NILALSPPAQ NLLLKSYFSE EGIGYNIIRV PMASCDFSIR TYTYADTPDD
FQLHNFSLPE EDTKLKIPLI HRALQLAQRP VSLLASPWTS PTWLKTNGAV NGKGSLKGQP
GDIYHQTWAR YFVKFLDAYA EHKLQFWAVT AENEPSAGLL SGYPFQCLGF TPEHQRDFIA
RDLGPTLANS THHNVRLLML DDQRLLLPHW AKVVLTDPEA AKYVHGIAVH WYLDFLAPAK
ATLGETHRLF PNTMLFASEA CVGSKFWEQS VRLGSWDRGM QYSHSIITNL LYHVVGWTDW
NLALNPEGGP NWVRNFVDSP IIVDITKDTF YKQPMFYHLG HFSKFIPEGS QRVGLVASQK
NDLDAVALMH PDGSAVVVVL NRSSKDVPLT IKDPAVGFLE TISPGYSIHT YLWRRQ*
mutated AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSERRMEL SMGPIQANHT GTGLLLTLQP EQKFQKVKGF
GGAMTDAAAL NILALSPPAQ NLLLKSYFSE EGIGYNIIRV PMASCDFSIR TYTYADTPDD
FQLHNFSLPE EDTKLKIPLI HRALQLAQRP VSLLASPWTS PTWLKTNGAV NGKGSLKGQP
GDIYHQTWAR YFVKFLDAYA EHKLQFWAVT AENEPSAGLL SGYPFQCLGF TPEHQRDFIA
RDLGPTLANS THHNVRLLML DDQRLLLPHW AKVVLTDPEA AKYVHGIAVH WYLDFLAPAK
ATLGETHRLF PNTMLFASEA CVGSKFWEQS VRLGSWDRGM QYSHSIITNL LYHVVGWTDW
NLALNPEGGP NWVRNFVDSP IIVDITKDTF YKQPMFYHLG HFSKFIPEGS QRVGLVASQK
NDLDAVALMH PDGSAVVVVL NRSSKDVPLT IKDPAVGFLE TISPGYSIHT YLWRRQ*
speed 1.03 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: simple_aae, prob: 0.999999791904194 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • known disease mutation at this position (HGMD CM960692)
  • known disease mutation: rs4296 (pathogenic)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr1:155209730C>TN/A show variant in all transcripts   IGV
HGNC symbol GBA
Ensembl transcript ID ENST00000427500
Genbank transcript ID NM_001171812
UniProt peptide P04062
alteration type single base exchange
alteration region CDS
DNA changes c.254G>A
cDNA.417G>A
g.4924G>A
AA changes G85E Score: 98 explain score(s)
position(s) of altered AA
if AA alteration in CDS
85
frameshift no
known variant Reference ID: rs77829017
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs4296 (pathogenic for Gaucher's disease, type 1|Gaucher disease) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)

known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3370.843
4.2430.995
(flanking)4.2430.995
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased4917wt: 0.9183 / mu: 0.9459 (marginal change - not scored)wt: GTACACGCAGTGGGC
mu: GTACACGCAGTGAGC
 ACAC|gcag
Donor increased4920wt: 0.37 / mu: 0.90wt: CACGCAGTGGGCGAC
mu: CACGCAGTGAGCGAC
 CGCA|gtgg
Donor marginally increased4924wt: 0.9316 / mu: 0.9975 (marginal change - not scored)wt: CAGTGGGCGACGGAT
mu: CAGTGAGCGACGGAT
 GTGG|gcga
Donor gained49280.33mu: GAGCGACGGATGGAG GCGA|cgga
distance from splice site 54
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      85GTFSRYESTRSGRRMELSMGPIQA
mutated  not conserved    85GTFSRYESTRSERRMELSMGPIQ
Ptroglodytes  all identical  ENSPTRG00000001416  85GTFSRYESTRSGRRMELSMGTIQ
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  all identical  ENSMUSG00000028048  65STRRGRRMELSVGAIQ
Ggallus  no homologue    
Trubripes  all identical  ENSTRUG00000010884  71HFSSYLSSMSGSRLEAGQGQVQ
Drerio  all identical  ENSDARG00000076058  67GQFLSYVSNKAGSRLMESQGQFQ
Dmelanogaster  all identical  FBgn0051148  71GLR
Celegans  all identical  Y4C6B.6  68TTSRNGKRMNRSELKHTTSSTAKTKVYVNTTQSFQPVMGFGAAFTDAAGINMKMLPQTMQ
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
8894STRANDmight get lost (downstream of altered splice site)
9698STRANDmight get lost (downstream of altered splice site)
9898CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
103116STRANDmight get lost (downstream of altered splice site)
119123STRANDmight get lost (downstream of altered splice site)
126133HELIXmight get lost (downstream of altered splice site)
137148HELIXmight get lost (downstream of altered splice site)
150153TURNmight get lost (downstream of altered splice site)
157163STRANDmight get lost (downstream of altered splice site)
166170STRANDmight get lost (downstream of altered splice site)
177179STRANDmight get lost (downstream of altered splice site)
185185CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
190193HELIXmight get lost (downstream of altered splice site)
196206HELIXmight get lost (downstream of altered splice site)
212218STRANDmight get lost (downstream of altered splice site)
222224HELIXmight get lost (downstream of altered splice site)
225227STRANDmight get lost (downstream of altered splice site)
227227CONFLICTN -> R (in Ref. 5; BAA02546).might get lost (downstream of altered splice site)
229233STRANDmight get lost (downstream of altered splice site)
235238STRANDmight get lost (downstream of altered splice site)
243261HELIXmight get lost (downstream of altered splice site)
267271STRANDmight get lost (downstream of altered splice site)
274274ACT_SITEProton donor.might get lost (downstream of altered splice site)
275279HELIXmight get lost (downstream of altered splice site)
284286STRANDmight get lost (downstream of altered splice site)
292301HELIXmight get lost (downstream of altered splice site)
303308HELIXmight get lost (downstream of altered splice site)
309309CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
311314TURNmight get lost (downstream of altered splice site)
315323STRANDmight get lost (downstream of altered splice site)
324326HELIXmight get lost (downstream of altered splice site)
329335HELIXmight get lost (downstream of altered splice site)
338341HELIXmight get lost (downstream of altered splice site)
346352STRANDmight get lost (downstream of altered splice site)
354356HELIXmight get lost (downstream of altered splice site)
359369HELIXmight get lost (downstream of altered splice site)
373381STRANDmight get lost (downstream of altered splice site)
379379ACT_SITENucleophile.might get lost (downstream of altered splice site)
379379MUTAGENE->G: Decreases activity 1000-fold.might get lost (downstream of altered splice site)
386388STRANDmight get lost (downstream of altered splice site)
396411HELIXmight get lost (downstream of altered splice site)
414424STRANDmight get lost (downstream of altered splice site)
426428STRANDmight get lost (downstream of altered splice site)
440444STRANDmight get lost (downstream of altered splice site)
445447HELIXmight get lost (downstream of altered splice site)
449452STRANDmight get lost (downstream of altered splice site)
454463HELIXmight get lost (downstream of altered splice site)
470470CONFLICTS -> I (in Ref. 15; AA sequence).might get lost (downstream of altered splice site)
471479STRANDmight get lost (downstream of altered splice site)
482489STRANDmight get lost (downstream of altered splice site)
495501STRANDmight get lost (downstream of altered splice site)
501501CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
503505STRANDmight get lost (downstream of altered splice site)
507513STRANDmight get lost (downstream of altered splice site)
514516TURNmight get lost (downstream of altered splice site)
517523STRANDmight get lost (downstream of altered splice site)
527533STRANDmight get lost (downstream of altered splice site)
534534CONFLICTR -> H (in Ref. 1; AAA35873).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1464 / 1464
position (AA) of stopcodon in wt / mu AA sequence 488 / 488
position of stopcodon in wt / mu cDNA 1627 / 1627
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 164 / 164
chromosome 1
strand -1
last intron/exon boundary 1522
theoretical NMD boundary in CDS 1308
length of CDS 1464
coding sequence (CDS) position 254
cDNA position
(for ins/del: last normal base / first normal base)
417
gDNA position
(for ins/del: last normal base / first normal base)
4924
chromosomal position
(for ins/del: last normal base / first normal base)
155209730
original gDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered gDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
original cDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered cDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
wildtype AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSGRRMEL SMGPIQANHT GTGIGYNIIR VPMASCDFSI
RTYTYADTPD DFQLHNFSLP EEDTKLKIPL IHRALQLAQR PVSLLASPWT SPTWLKTNGA
VNGKGSLKGQ PGDIYHQTWA RYFVKFLDAY AEHKLQFWAV TAENEPSAGL LSGYPFQCLG
FTPEHQRDFI ARDLGPTLAN STHHNVRLLM LDDQRLLLPH WAKVVLTDPE AAKYVHGIAV
HWYLDFLAPA KATLGETHRL FPNTMLFASE ACVGSKFWEQ SVRLGSWDRG MQYSHSIITN
LLYHVVGWTD WNLALNPEGG PNWVRNFVDS PIIVDITKDT FYKQPMFYHL GHFSKFIPEG
SQRVGLVASQ KNDLDAVALM HPDGSAVVVV LNRSSKDVPL TIKDPAVGFL ETISPGYSIH
TYLWRRQ*
mutated AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGA RPCIPKSFGY SSVVCVCNAT
YCDSFDPPTF PALGTFSRYE STRSERRMEL SMGPIQANHT GTGIGYNIIR VPMASCDFSI
RTYTYADTPD DFQLHNFSLP EEDTKLKIPL IHRALQLAQR PVSLLASPWT SPTWLKTNGA
VNGKGSLKGQ PGDIYHQTWA RYFVKFLDAY AEHKLQFWAV TAENEPSAGL LSGYPFQCLG
FTPEHQRDFI ARDLGPTLAN STHHNVRLLM LDDQRLLLPH WAKVVLTDPE AAKYVHGIAV
HWYLDFLAPA KATLGETHRL FPNTMLFASE ACVGSKFWEQ SVRLGSWDRG MQYSHSIITN
LLYHVVGWTD WNLALNPEGG PNWVRNFVDS PIIVDITKDT FYKQPMFYHL GHFSKFIPEG
SQRVGLVASQ KNDLDAVALM HPDGSAVVVV LNRSSKDVPL TIKDPAVGFL ETISPGYSIH
TYLWRRQ*
speed 0.72 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: without_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • known disease mutation at this position (HGMD CM960692)
  • known disease mutation: rs4296 (pathogenic)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr1:155209730C>TN/A show variant in all transcripts   IGV
HGNC symbol GBA
Ensembl transcript ID ENST00000536770
Genbank transcript ID N/A
UniProt peptide P04062
alteration type single base exchange
alteration region intron
DNA changes g.4924G>A
AA changes N/A
position(s) of altered AA
if AA alteration in CDS
N/A
frameshift N/A
known variant Reference ID: rs77829017
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs4296 (pathogenic for Gaucher's disease, type 1|Gaucher disease) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)

known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3370.843
4.2430.995
(flanking)4.2430.995
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased4917wt: 0.9183 / mu: 0.9459 (marginal change - not scored)wt: GTACACGCAGTGGGC
mu: GTACACGCAGTGAGC
 ACAC|gcag
Donor increased4920wt: 0.37 / mu: 0.90wt: CACGCAGTGGGCGAC
mu: CACGCAGTGAGCGAC
 CGCA|gtgg
Donor marginally increased4924wt: 0.9316 / mu: 0.9975 (marginal change - not scored)wt: CAGTGGGCGACGGAT
mu: CAGTGAGCGACGGAT
 GTGG|gcga
Donor gained49280.33mu: GAGCGACGGATGGAG GCGA|cgga
distance from splice site 691
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
N/A
protein features
start (aa)end (aa)featuredetails 
139SIGNALIn isoform Long.might get lost (downstream of altered splice site)
2139SIGNALIn isoform Short.might get lost (downstream of altered splice site)
4343MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
4343DISULFIDmight get lost (downstream of altered splice site)
4952STRANDmight get lost (downstream of altered splice site)
5457STRANDmight get lost (downstream of altered splice site)
5555DISULFIDmight get lost (downstream of altered splice site)
5757MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
5757DISULFIDmight get lost (downstream of altered splice site)
5858CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
6262DISULFIDmight get lost (downstream of altered splice site)
6262MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
7582STRANDmight get lost (downstream of altered splice site)
8894STRANDmight get lost (downstream of altered splice site)
9698STRANDmight get lost (downstream of altered splice site)
9898CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
103116STRANDmight get lost (downstream of altered splice site)
119123STRANDmight get lost (downstream of altered splice site)
126133HELIXmight get lost (downstream of altered splice site)
137148HELIXmight get lost (downstream of altered splice site)
150153TURNmight get lost (downstream of altered splice site)
157163STRANDmight get lost (downstream of altered splice site)
166170STRANDmight get lost (downstream of altered splice site)
177179STRANDmight get lost (downstream of altered splice site)
185185CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
190193HELIXmight get lost (downstream of altered splice site)
196206HELIXmight get lost (downstream of altered splice site)
212218STRANDmight get lost (downstream of altered splice site)
222224HELIXmight get lost (downstream of altered splice site)
225227STRANDmight get lost (downstream of altered splice site)
227227CONFLICTN -> R (in Ref. 5; BAA02546).might get lost (downstream of altered splice site)
229233STRANDmight get lost (downstream of altered splice site)
235238STRANDmight get lost (downstream of altered splice site)
243261HELIXmight get lost (downstream of altered splice site)
267271STRANDmight get lost (downstream of altered splice site)
274274ACT_SITEProton donor.might get lost (downstream of altered splice site)
275279HELIXmight get lost (downstream of altered splice site)
284286STRANDmight get lost (downstream of altered splice site)
292301HELIXmight get lost (downstream of altered splice site)
303308HELIXmight get lost (downstream of altered splice site)
309309CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
311314TURNmight get lost (downstream of altered splice site)
315323STRANDmight get lost (downstream of altered splice site)
324326HELIXmight get lost (downstream of altered splice site)
329335HELIXmight get lost (downstream of altered splice site)
338341HELIXmight get lost (downstream of altered splice site)
346352STRANDmight get lost (downstream of altered splice site)
354356HELIXmight get lost (downstream of altered splice site)
359369HELIXmight get lost (downstream of altered splice site)
373381STRANDmight get lost (downstream of altered splice site)
379379MUTAGENE->G: Decreases activity 1000-fold.might get lost (downstream of altered splice site)
379379ACT_SITENucleophile.might get lost (downstream of altered splice site)
386388STRANDmight get lost (downstream of altered splice site)
396411HELIXmight get lost (downstream of altered splice site)
414424STRANDmight get lost (downstream of altered splice site)
426428STRANDmight get lost (downstream of altered splice site)
440444STRANDmight get lost (downstream of altered splice site)
445447HELIXmight get lost (downstream of altered splice site)
449452STRANDmight get lost (downstream of altered splice site)
454463HELIXmight get lost (downstream of altered splice site)
470470CONFLICTS -> I (in Ref. 15; AA sequence).might get lost (downstream of altered splice site)
471479STRANDmight get lost (downstream of altered splice site)
482489STRANDmight get lost (downstream of altered splice site)
495501STRANDmight get lost (downstream of altered splice site)
501501CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
503505STRANDmight get lost (downstream of altered splice site)
507513STRANDmight get lost (downstream of altered splice site)
514516TURNmight get lost (downstream of altered splice site)
517523STRANDmight get lost (downstream of altered splice site)
527533STRANDmight get lost (downstream of altered splice site)
534534CONFLICTR -> H (in Ref. 1; AAA35873).might get lost (downstream of altered splice site)
length of protein N/A
AA sequence altered N/A
position of stopcodon in wt / mu CDS N/A
position (AA) of stopcodon in wt / mu AA sequence N/A
position of stopcodon in wt / mu cDNA N/A
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 115 / 115
chromosome 1
strand -1
last intron/exon boundary 1281
theoretical NMD boundary in CDS 1116
length of CDS 1272
coding sequence (CDS) position N/A
cDNA position
(for ins/del: last normal base / first normal base)
N/A
gDNA position
(for ins/del: last normal base / first normal base)
4924
chromosomal position
(for ins/del: last normal base / first normal base)
155209730
original gDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered gDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
original cDNA sequence snippet N/A
altered cDNA sequence snippet N/A
wildtype AA sequence MEFSSPSREE CPKPLSRVSI MAGSLTGLLL LQAVSWASGI GYNIIRVPMA SCDFSIRTYT
YADTPDDFQL HNFSLPEEDT KLKIPLIHRA LQLAQRPVSL LASPWTSPTW LKTNGAVNGK
GSLKGQPGDI YHQTWARYFV KFLDAYAEHK LQFWAVTAEN EPSAGLLSGY PFQCLGFTPE
HQRDFIARDL GPTLANSTHH NVRLLMLDDQ RLLLPHWAKV VLTDPEAAKY VHGIAVHWYL
DFLAPAKATL GETHRLFPNT MLFASEACVG SKFWEQSVRL GSWDRGMQYS HSIITNLLYH
VVGWTDWNLA LNPEGGPNWV RNFVDSPIIV DITKDTFYKQ PMFYHLGHFS KFIPEGSQRV
GLVASQKNDL DAVALMHPDG SAVVVVLNRS SKDVPLTIKD PAVGFLETIS PGYSIHTYLW
RRQ*
mutated AA sequence N/A
speed 0.58 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

disease causing

Model: without_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway)      (explain)
Summary
  • known disease mutation at this position (HGMD CM960692)
  • known disease mutation: rs4296 (pathogenic)
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr1:155209730C>TN/A show variant in all transcripts   IGV
HGNC symbol GBA
Ensembl transcript ID ENST00000428024
Genbank transcript ID NM_001171811
UniProt peptide P04062
alteration type single base exchange
alteration region 5'UTR
DNA changes cDNA.496G>A
g.4924G>A
AA changes N/A
position(s) of altered AA
if AA alteration in CDS
N/A
frameshift N/A
known variant Reference ID: rs77829017
databasehomozygous (T/T)heterozygousallele carriers
1000G---
ExAC011

known disease mutation: rs4296 (pathogenic for Gaucher's disease, type 1|Gaucher disease) dbSNP  NCBI variation viewer
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)

known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
known disease mutation at this position, please check HGMD for details (HGMD ID CM960692)
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3370.843
4.2430.995
(flanking)4.2430.995
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites splice site change before start ATG (at aa -2) |
effectgDNA positionscoredetection sequence  exon-intron border
Donor marginally increased4917wt: 0.9183 / mu: 0.9459 (marginal change - not scored)wt: GTACACGCAGTGGGC
mu: GTACACGCAGTGAGC
 ACAC|gcag
Donor increased4920wt: 0.37 / mu: 0.90wt: CACGCAGTGGGCGAC
mu: CACGCAGTGAGCGAC
 CGCA|gtgg
Donor marginally increased4924wt: 0.9316 / mu: 0.9975 (marginal change - not scored)wt: CAGTGGGCGACGGAT
mu: CAGTGAGCGACGGAT
 GTGG|gcga
Donor gained49280.33mu: GAGCGACGGATGGAG GCGA|cgga
distance from splice site 54
Kozak consensus sequence altered? no
conservation
protein level for non-synonymous changes
N/A
protein features
start (aa)end (aa)featuredetails 
139SIGNALIn isoform Long.might get lost (downstream of altered splice site)
2139SIGNALIn isoform Short.might get lost (downstream of altered splice site)
4343MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
4343DISULFIDmight get lost (downstream of altered splice site)
4952STRANDmight get lost (downstream of altered splice site)
5457STRANDmight get lost (downstream of altered splice site)
5555DISULFIDmight get lost (downstream of altered splice site)
5757MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
5757DISULFIDmight get lost (downstream of altered splice site)
5858CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
6262DISULFIDmight get lost (downstream of altered splice site)
6262MUTAGENC->S: Loss of activity.might get lost (downstream of altered splice site)
7582STRANDmight get lost (downstream of altered splice site)
8894STRANDmight get lost (downstream of altered splice site)
9698STRANDmight get lost (downstream of altered splice site)
9898CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
103116STRANDmight get lost (downstream of altered splice site)
119123STRANDmight get lost (downstream of altered splice site)
126133HELIXmight get lost (downstream of altered splice site)
137148HELIXmight get lost (downstream of altered splice site)
150153TURNmight get lost (downstream of altered splice site)
157163STRANDmight get lost (downstream of altered splice site)
166170STRANDmight get lost (downstream of altered splice site)
177179STRANDmight get lost (downstream of altered splice site)
185185CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
190193HELIXmight get lost (downstream of altered splice site)
196206HELIXmight get lost (downstream of altered splice site)
212218STRANDmight get lost (downstream of altered splice site)
222224HELIXmight get lost (downstream of altered splice site)
225227STRANDmight get lost (downstream of altered splice site)
227227CONFLICTN -> R (in Ref. 5; BAA02546).might get lost (downstream of altered splice site)
229233STRANDmight get lost (downstream of altered splice site)
235238STRANDmight get lost (downstream of altered splice site)
243261HELIXmight get lost (downstream of altered splice site)
267271STRANDmight get lost (downstream of altered splice site)
274274ACT_SITEProton donor.might get lost (downstream of altered splice site)
275279HELIXmight get lost (downstream of altered splice site)
284286STRANDmight get lost (downstream of altered splice site)
292301HELIXmight get lost (downstream of altered splice site)
303308HELIXmight get lost (downstream of altered splice site)
309309CARBOHYDN-linked (GlcNAc...).might get lost (downstream of altered splice site)
311314TURNmight get lost (downstream of altered splice site)
315323STRANDmight get lost (downstream of altered splice site)
324326HELIXmight get lost (downstream of altered splice site)
329335HELIXmight get lost (downstream of altered splice site)
338341HELIXmight get lost (downstream of altered splice site)
346352STRANDmight get lost (downstream of altered splice site)
354356HELIXmight get lost (downstream of altered splice site)
359369HELIXmight get lost (downstream of altered splice site)
373381STRANDmight get lost (downstream of altered splice site)
379379MUTAGENE->G: Decreases activity 1000-fold.might get lost (downstream of altered splice site)
379379ACT_SITENucleophile.might get lost (downstream of altered splice site)
386388STRANDmight get lost (downstream of altered splice site)
396411HELIXmight get lost (downstream of altered splice site)
414424STRANDmight get lost (downstream of altered splice site)
426428STRANDmight get lost (downstream of altered splice site)
440444STRANDmight get lost (downstream of altered splice site)
445447HELIXmight get lost (downstream of altered splice site)
449452STRANDmight get lost (downstream of altered splice site)
454463HELIXmight get lost (downstream of altered splice site)
470470CONFLICTS -> I (in Ref. 15; AA sequence).might get lost (downstream of altered splice site)
471479STRANDmight get lost (downstream of altered splice site)
482489STRANDmight get lost (downstream of altered splice site)
495501STRANDmight get lost (downstream of altered splice site)
501501CARBOHYDN-linked (GlcNAc...) (Potential).might get lost (downstream of altered splice site)
503505STRANDmight get lost (downstream of altered splice site)
507513STRANDmight get lost (downstream of altered splice site)
514516TURNmight get lost (downstream of altered splice site)
517523STRANDmight get lost (downstream of altered splice site)
527533STRANDmight get lost (downstream of altered splice site)
534534CONFLICTR -> H (in Ref. 1; AAA35873).might get lost (downstream of altered splice site)
length of protein N/A
AA sequence altered N/A
position of stopcodon in wt / mu CDS N/A
position (AA) of stopcodon in wt / mu AA sequence N/A
position of stopcodon in wt / mu cDNA N/A
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 504 / 504
chromosome 1
strand -1
last intron/exon boundary 1748
theoretical NMD boundary in CDS 1194
length of CDS 1350
coding sequence (CDS) position N/A
cDNA position
(for ins/del: last normal base / first normal base)
496
gDNA position
(for ins/del: last normal base / first normal base)
4924
chromosomal position
(for ins/del: last normal base / first normal base)
155209730
original gDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered gDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
original cDNA sequence snippet CTATGAGAGTACACGCAGTGGGCGACGGATGGAGCTGAGTA
altered cDNA sequence snippet CTATGAGAGTACACGCAGTGAGCGACGGATGGAGCTGAGTA
wildtype AA sequence MELSMGPIQA NHTGTGLLLT LQPEQKFQKV KGFGGAMTDA AALNILALSP PAQNLLLKSY
FSEEGIGYNI IRVPMASCDF SIRTYTYADT PDDFQLHNFS LPEEDTKLKI PLIHRALQLA
QRPVSLLASP WTSPTWLKTN GAVNGKGSLK GQPGDIYHQT WARYFVKFLD AYAEHKLQFW
AVTAENEPSA GLLSGYPFQC LGFTPEHQRD FIARDLGPTL ANSTHHNVRL LMLDDQRLLL
PHWAKVVLTD PEAAKYVHGI AVHWYLDFLA PAKATLGETH RLFPNTMLFA SEACVGSKFW
EQSVRLGSWD RGMQYSHSII TNLLYHVVGW TDWNLALNPE GGPNWVRNFV DSPIIVDITK
DTFYKQPMFY HLGHFSKFIP EGSQRVGLVA SQKNDLDAVA LMHPDGSAVV VVLNRSSKDV
PLTIKDPAVG FLETISPGYS IHTYLWRRQ*
mutated AA sequence N/A
speed 0.68 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems