Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 6 transcript(s)...
Querying Taster for transcript #1: ENST00000395002
Querying Taster for transcript #2: ENST00000264344
Querying Taster for transcript #3: ENST00000503556
Querying Taster for transcript #4: ENST00000511976
Querying Taster for transcript #5: ENST00000508369
Querying Taster for transcript #6: ENST00000513837
MT speed 5.09 s - this script 5.173502 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV443Isingle base exchangers7657817show file
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV769Isingle base exchangers7657817show file
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV429Isingle base exchangers7657817show file
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV355Isingle base exchangers7657817show file
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV443Isingle base exchangers7657817show file
FAM13Apolymorphism_automatic0.00330707150066001simple_aaeaffectedV415Isingle base exchangers7657817show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000395002
Genbank transcript ID NM_001265579
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.1327G>A
cDNA.1684G>A
g.363691G>A
AA changes V443I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
443
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      443QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    443QELVDKAIKPSIEATLESIQRKL
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777QDLSDKSAKPAVEVTLDSIQKKL
Trubripes  not conserved  ENSTRUG00000012811  772----EKVPKPPAETTLESILKKL
Drerio  all identical  ENSDARG00000075564  814-----KAPKPPVESTLETVTNKL
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768PETVEKPAKPSMEATMEAIQKKL
protein features
start (aa)end (aa)featuredetails 
509509CONFLICTS -> T (in Ref. 2; AK027138).might get lost (downstream of altered splice site)
655655MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
666730COILEDPotential.might get lost (downstream of altered splice site)
732732MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
740740CONFLICTN -> Y (in Ref. 2; BAG59483).might get lost (downstream of altered splice site)
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2010 / 2010
position (AA) of stopcodon in wt / mu AA sequence 670 / 670
position of stopcodon in wt / mu cDNA 2367 / 2367
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 358 / 358
chromosome 4
strand -1
last intron/exon boundary 2241
theoretical NMD boundary in CDS 1833
length of CDS 2010
coding sequence (CDS) position 1327
cDNA position
(for ins/del: last normal base / first normal base)
1684
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MACEIMPLQS SQEDERPLSP FYLSAHVPQV SNVSATGELL ERTIRSAVEQ HLFDVNNSGG
QSSEDSESGT LSASSATSAR QRRRQSKEQD EVRHGRDKGL INKENTPSGF NHLDDCILNT
QEVEKVHKNT FGCAGERSKP KRQKSSTKLS ELHDNQDGLV NMESLNSTRS HERTGPDDFE
WMSDERKGNE KDGGHTQHFE SPTMKIQEHP SLSDTKQQRN QDAGDQEESF VSEVPQSDLT
ALCDEKNWEE PIPAFSSWQR ENSDSDEAHL SPQAGRLIRQ LLDEDSDPML SPRFYAYGQS
RQYLDDTEVP PSPPNSHSFM RRRSSSLGSY DDEQEDLTPA QLTRRIQSLK KKIRKFEDRF
EEEKKYRPSH SDKAANPEVL KWTNDLAKFR RQLKESKLKI SEEDLTPRMR QRSNTLPKSF
GSQLEKEDEK KQELVDKAIK PSVEATLESI QRKLQEKRAE SSRPEDIKDM TKDQIANEKV
ALQKALLYYE SIHGRPVTKN ERQVMKPLYD RYRLVKQILS RANTIPIIEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
mutated AA sequence MACEIMPLQS SQEDERPLSP FYLSAHVPQV SNVSATGELL ERTIRSAVEQ HLFDVNNSGG
QSSEDSESGT LSASSATSAR QRRRQSKEQD EVRHGRDKGL INKENTPSGF NHLDDCILNT
QEVEKVHKNT FGCAGERSKP KRQKSSTKLS ELHDNQDGLV NMESLNSTRS HERTGPDDFE
WMSDERKGNE KDGGHTQHFE SPTMKIQEHP SLSDTKQQRN QDAGDQEESF VSEVPQSDLT
ALCDEKNWEE PIPAFSSWQR ENSDSDEAHL SPQAGRLIRQ LLDEDSDPML SPRFYAYGQS
RQYLDDTEVP PSPPNSHSFM RRRSSSLGSY DDEQEDLTPA QLTRRIQSLK KKIRKFEDRF
EEEKKYRPSH SDKAANPEVL KWTNDLAKFR RQLKESKLKI SEEDLTPRMR QRSNTLPKSF
GSQLEKEDEK KQELVDKAIK PSIEATLESI QRKLQEKRAE SSRPEDIKDM TKDQIANEKV
ALQKALLYYE SIHGRPVTKN ERQVMKPLYD RYRLVKQILS RANTIPIIEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
speed 1.16 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000264344
Genbank transcript ID NM_001265578
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.2305G>A
cDNA.2513G>A
g.363691G>A
AA changes V769I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
769
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      769QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    769QELVDKAIKPSIEATLESIQRKL
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777QDLSDKSAKPAVEVT
Trubripes  not conserved  ENSTRUG00000012811  767KPPAETTLESILKKL
Drerio  all identical  ENSDARG00000075564  814----TKAPKPPVESTLETVTNKL
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768PETVEKPAKPSMEATMEAI
protein features
start (aa)end (aa)featuredetails 
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 3072 / 3072
position (AA) of stopcodon in wt / mu AA sequence 1024 / 1024
position of stopcodon in wt / mu cDNA 3280 / 3280
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 209 / 209
chromosome 4
strand -1
last intron/exon boundary 3154
theoretical NMD boundary in CDS 2895
length of CDS 3072
coding sequence (CDS) position 2305
cDNA position
(for ins/del: last normal base / first normal base)
2513
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MGAGALAICQ SKAAVRLKED MKKIVAVPLN EQKDFTYQKL FGVSLQELER QGLTENGIPA
VVWNIVEYLT QHGLTQEGLF RVNGNVKVVE QLRLKFESGV PVELGKDGDV CSAASLLKLF
LRELPDSLIT SALQPRFIQL FQDGRNDVQE SSLRDLIKEL PDTHYCLLKY LCQFLTKVAK
HHVQNRMNVH NLATVFGPNC FHVPPGLEGM KEQDLCNKIM AKILENYNTL FEVEYTENDH
LRCENLARLI IVKEVYYKNS LPILLTRGLE RDMPKPPPKT KIPKSRSEGS IQAHRVLQPE
LSDGIPQLSL RLSYRKACLE DMNSAEGAIS AKLVPSSQED ERPLSPFYLS AHVPQVSNVS
ATGELLERTI RSAVEQHLFD VNNSGGQSSE DSESGTLSAS SATSARQRRR QSKEQDEVRH
GRDKGLINKE NTPSGFNHLD DCILNTQEVE KVHKNTFGCA GERSKPKRQK SSTKLSELHD
NQDGLVNMES LNSTRSHERT GPDDFEWMSD ERKGNEKDGG HTQHFESPTM KIQEHPSLSD
TKQQRNQDAG DQEESFVSEV PQSDLTALCD EKNWEEPIPA FSSWQRENSD SDEAHLSPQA
GRLIRQLLDE DSDPMLSPRF YAYGQSRQYL DDTEVPPSPP NSHSFMRRRS SSLGSYDDEQ
EDLTPAQLTR RIQSLKKKIR KFEDRFEEEK KYRPSHSDKA ANPEVLKWTN DLAKFRRQLK
ESKLKISEED LTPRMRQRSN TLPKSFGSQL EKEDEKKQEL VDKAIKPSVE ATLESIQRKL
QEKRAESSRP EDIKDMTKDQ IANEKVALQK ALLYYESIHG RPVTKNERQV MKPLYDRYRL
VKQILSRANT IPIIGSPSSK RRSPLLQPII EGETASFFKE IKEEEEGSED DSNVKPDFMV
TLKTDFSARC FLDQFEDDAD GFISPMDDKI PSKCSQDTGL SNLHAASIPE LLEHLQEMRE
EKKRIRKKLR DFEDNFFRQN GRNVQKEDRT PMAEEYSEYK HIKAKLRLLE VLISKRDTDS
KSM*
mutated AA sequence MGAGALAICQ SKAAVRLKED MKKIVAVPLN EQKDFTYQKL FGVSLQELER QGLTENGIPA
VVWNIVEYLT QHGLTQEGLF RVNGNVKVVE QLRLKFESGV PVELGKDGDV CSAASLLKLF
LRELPDSLIT SALQPRFIQL FQDGRNDVQE SSLRDLIKEL PDTHYCLLKY LCQFLTKVAK
HHVQNRMNVH NLATVFGPNC FHVPPGLEGM KEQDLCNKIM AKILENYNTL FEVEYTENDH
LRCENLARLI IVKEVYYKNS LPILLTRGLE RDMPKPPPKT KIPKSRSEGS IQAHRVLQPE
LSDGIPQLSL RLSYRKACLE DMNSAEGAIS AKLVPSSQED ERPLSPFYLS AHVPQVSNVS
ATGELLERTI RSAVEQHLFD VNNSGGQSSE DSESGTLSAS SATSARQRRR QSKEQDEVRH
GRDKGLINKE NTPSGFNHLD DCILNTQEVE KVHKNTFGCA GERSKPKRQK SSTKLSELHD
NQDGLVNMES LNSTRSHERT GPDDFEWMSD ERKGNEKDGG HTQHFESPTM KIQEHPSLSD
TKQQRNQDAG DQEESFVSEV PQSDLTALCD EKNWEEPIPA FSSWQRENSD SDEAHLSPQA
GRLIRQLLDE DSDPMLSPRF YAYGQSRQYL DDTEVPPSPP NSHSFMRRRS SSLGSYDDEQ
EDLTPAQLTR RIQSLKKKIR KFEDRFEEEK KYRPSHSDKA ANPEVLKWTN DLAKFRRQLK
ESKLKISEED LTPRMRQRSN TLPKSFGSQL EKEDEKKQEL VDKAIKPSIE ATLESIQRKL
QEKRAESSRP EDIKDMTKDQ IANEKVALQK ALLYYESIHG RPVTKNERQV MKPLYDRYRL
VKQILSRANT IPIIGSPSSK RRSPLLQPII EGETASFFKE IKEEEEGSED DSNVKPDFMV
TLKTDFSARC FLDQFEDDAD GFISPMDDKI PSKCSQDTGL SNLHAASIPE LLEHLQEMRE
EKKRIRKKLR DFEDNFFRQN GRNVQKEDRT PMAEEYSEYK HIKAKLRLLE VLISKRDTDS
KSM*
speed 0.82 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000503556
Genbank transcript ID N/A
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.1285G>A
cDNA.1512G>A
g.363691G>A
AA changes V429I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
429
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      429QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    429VDKAIKPSIEATLESIQRKL
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777VEVTLDSIQKKL
Trubripes  not conserved  ENSTRUG00000012811  772----EKVPKPPAETTLES
Drerio  all identical  ENSDARG00000075564  814-----KAPKPPVESTLETVTNKL
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768AKPSMEATMEAIQKKL
protein features
start (aa)end (aa)featuredetails 
509509CONFLICTS -> T (in Ref. 2; AK027138).might get lost (downstream of altered splice site)
655655MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
666730COILEDPotential.might get lost (downstream of altered splice site)
732732MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
740740CONFLICTN -> Y (in Ref. 2; BAG59483).might get lost (downstream of altered splice site)
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2052 / 2052
position (AA) of stopcodon in wt / mu AA sequence 684 / 684
position of stopcodon in wt / mu cDNA 2279 / 2279
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 228 / 228
chromosome 4
strand -1
last intron/exon boundary 2153
theoretical NMD boundary in CDS 1875
length of CDS 2052
coding sequence (CDS) position 1285
cDNA position
(for ins/del: last normal base / first normal base)
1512
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MACEIMPLQS AHVPQVSNVS ATGELLERTI RSAVEQHLFD VNNSGGQSSE DSESGTLSAS
SATSARQRRR QSKEQDEVRH GRDKGLINKE NTPSGFNHLD DCILNTQEVE KVHKNTFGCA
GERSKPKRQK SSTKLSELHD NQDGLVNMES LNSTRSHERT GPDDFEWMSD ERKGNEKDGG
HTQHFESPTM KIQEHPSLSD TKQQRNQDAG DQEESFVSEV PQSDLTALCD EKNWEEPIPA
FSSWQRENSD SDEAHLSPQA GRLIRQLLDE DSDPMLSPRF YAYGQSRQYL DDTEVPPSPP
NSHSFMRRRS SSLGSYDDEQ EDLTPAQLTR RIQSLKKKIR KFEDRFEEEK KYRPSHSDKA
ANPEVLKWTN DLAKFRRQLK ESKLKISEED LTPRMRQRSN TLPKSFGSQL EKEDEKKQEL
VDKAIKPSVE ATLESIQRKL QEKRAESSRP EDIKDMTKDQ IANEKVALQK ALLYYESIHG
RPVTKNERQV MKPLYDRYRL VKQILSRANT IPIIGSPSSK RRSPLLQPII EGETASFFKE
IKEEEEGSED DSNVKPDFMV TLKTDFSARC FLDQFEDDAD GFISPMDDKI PSKCSQDTGL
SNLHAASIPE LLEHLQEMRE EKKRIRKKLR DFEDNFFRQN GRNVQKEDRT PMAEEYSEYK
HIKAKLRLLE VLISKRDTDS KSM*
mutated AA sequence MACEIMPLQS AHVPQVSNVS ATGELLERTI RSAVEQHLFD VNNSGGQSSE DSESGTLSAS
SATSARQRRR QSKEQDEVRH GRDKGLINKE NTPSGFNHLD DCILNTQEVE KVHKNTFGCA
GERSKPKRQK SSTKLSELHD NQDGLVNMES LNSTRSHERT GPDDFEWMSD ERKGNEKDGG
HTQHFESPTM KIQEHPSLSD TKQQRNQDAG DQEESFVSEV PQSDLTALCD EKNWEEPIPA
FSSWQRENSD SDEAHLSPQA GRLIRQLLDE DSDPMLSPRF YAYGQSRQYL DDTEVPPSPP
NSHSFMRRRS SSLGSYDDEQ EDLTPAQLTR RIQSLKKKIR KFEDRFEEEK KYRPSHSDKA
ANPEVLKWTN DLAKFRRQLK ESKLKISEED LTPRMRQRSN TLPKSFGSQL EKEDEKKQEL
VDKAIKPSIE ATLESIQRKL QEKRAESSRP EDIKDMTKDQ IANEKVALQK ALLYYESIHG
RPVTKNERQV MKPLYDRYRL VKQILSRANT IPIIGSPSSK RRSPLLQPII EGETASFFKE
IKEEEEGSED DSNVKPDFMV TLKTDFSARC FLDQFEDDAD GFISPMDDKI PSKCSQDTGL
SNLHAASIPE LLEHLQEMRE EKKRIRKKLR DFEDNFFRQN GRNVQKEDRT PMAEEYSEYK
HIKAKLRLLE VLISKRDTDS KSM*
speed 1.20 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000511976
Genbank transcript ID N/A
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.1063G>A
cDNA.1708G>A
g.363691G>A
AA changes V355I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
355
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      355QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    355QELVDKAIKPSIEATLE
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777QDLSDKSAKPAVEVTLDSIQKKL
Trubripes  not conserved  ENSTRUG00000012811  769--EKVPKPPAETTLESILKKL
Drerio  all identical  ENSDARG00000075564  814-----KAPKPPVESTLETVTNKL
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768PETVEKPAKPSMEATMEAIQ
protein features
start (aa)end (aa)featuredetails 
509509CONFLICTS -> T (in Ref. 2; AK027138).might get lost (downstream of altered splice site)
655655MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
666730COILEDPotential.might get lost (downstream of altered splice site)
732732MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
740740CONFLICTN -> Y (in Ref. 2; BAG59483).might get lost (downstream of altered splice site)
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1830 / 1830
position (AA) of stopcodon in wt / mu AA sequence 610 / 610
position of stopcodon in wt / mu cDNA 2475 / 2475
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 646 / 646
chromosome 4
strand -1
last intron/exon boundary 2349
theoretical NMD boundary in CDS 1653
length of CDS 1830
coding sequence (CDS) position 1063
cDNA position
(for ins/del: last normal base / first normal base)
1708
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MKEQDLCNKI MAKILENYNT LFEVEYTEND HLRCENLARL IIVKEVYYKN SLPILLTRGL
ERDMPKPPPK TKNMESLNST RSHERTGPDD FEWMSDERKG NEKDGGHTQH FESPTMKIQE
HPSLSDTKQQ RNQDAGDQEE SFVSEVPQSD LTALCDEKNW EEPIPAFSSW QRENSDSDEA
HLSPQAGRLI RQLLDEDSDP MLSPRFYAYG QSRQYLDDTE VPPSPPNSHS FMRRRSSSLG
SYDDEQEDLT PAQLTRRIQS LKKKIRKFED RFEEEKKYRP SHSDKAANPE VLKWTNDLAK
FRRQLKESKL KISEEDLTPR MRQRSNTLPK SFGSQLEKED EKKQELVDKA IKPSVEATLE
SIQRKLQEKR AESSRPEDIK DMTKDQIANE KVALQKALLY YESIHGRPVT KNERQVMKPL
YDRYRLVKQI LSRANTIPII GSPSSKRRSP LLQPIIEGET ASFFKEIKEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
mutated AA sequence MKEQDLCNKI MAKILENYNT LFEVEYTEND HLRCENLARL IIVKEVYYKN SLPILLTRGL
ERDMPKPPPK TKNMESLNST RSHERTGPDD FEWMSDERKG NEKDGGHTQH FESPTMKIQE
HPSLSDTKQQ RNQDAGDQEE SFVSEVPQSD LTALCDEKNW EEPIPAFSSW QRENSDSDEA
HLSPQAGRLI RQLLDEDSDP MLSPRFYAYG QSRQYLDDTE VPPSPPNSHS FMRRRSSSLG
SYDDEQEDLT PAQLTRRIQS LKKKIRKFED RFEEEKKYRP SHSDKAANPE VLKWTNDLAK
FRRQLKESKL KISEEDLTPR MRQRSNTLPK SFGSQLEKED EKKQELVDKA IKPSIEATLE
SIQRKLQEKR AESSRPEDIK DMTKDQIANE KVALQKALLY YESIHGRPVT KNERQVMKPL
YDRYRLVKQI LSRANTIPII GSPSSKRRSP LLQPIIEGET ASFFKEIKEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
speed 0.72 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000508369
Genbank transcript ID NM_001015045
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.1327G>A
cDNA.1524G>A
g.363691G>A
AA changes V443I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
443
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      443QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    443QELVDKAIKPSIEATLESIQRKL
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777QDLSDKSAKPAVEVTLDSIQKKL
Trubripes  not conserved  ENSTRUG00000012811  772----EKVPKPPAETTLESILKKL
Drerio  all identical  ENSDARG00000075564  814-----KAPKPPVESTLETVTNKL
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768PETVEKPAKPSMEATMEAIQKKL
protein features
start (aa)end (aa)featuredetails 
509509CONFLICTS -> T (in Ref. 2; AK027138).might get lost (downstream of altered splice site)
655655MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
666730COILEDPotential.might get lost (downstream of altered splice site)
732732MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
740740CONFLICTN -> Y (in Ref. 2; BAG59483).might get lost (downstream of altered splice site)
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2094 / 2094
position (AA) of stopcodon in wt / mu AA sequence 698 / 698
position of stopcodon in wt / mu cDNA 2291 / 2291
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 198 / 198
chromosome 4
strand -1
last intron/exon boundary 2165
theoretical NMD boundary in CDS 1917
length of CDS 2094
coding sequence (CDS) position 1327
cDNA position
(for ins/del: last normal base / first normal base)
1524
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MACEIMPLQS SQEDERPLSP FYLSAHVPQV SNVSATGELL ERTIRSAVEQ HLFDVNNSGG
QSSEDSESGT LSASSATSAR QRRRQSKEQD EVRHGRDKGL INKENTPSGF NHLDDCILNT
QEVEKVHKNT FGCAGERSKP KRQKSSTKLS ELHDNQDGLV NMESLNSTRS HERTGPDDFE
WMSDERKGNE KDGGHTQHFE SPTMKIQEHP SLSDTKQQRN QDAGDQEESF VSEVPQSDLT
ALCDEKNWEE PIPAFSSWQR ENSDSDEAHL SPQAGRLIRQ LLDEDSDPML SPRFYAYGQS
RQYLDDTEVP PSPPNSHSFM RRRSSSLGSY DDEQEDLTPA QLTRRIQSLK KKIRKFEDRF
EEEKKYRPSH SDKAANPEVL KWTNDLAKFR RQLKESKLKI SEEDLTPRMR QRSNTLPKSF
GSQLEKEDEK KQELVDKAIK PSVEATLESI QRKLQEKRAE SSRPEDIKDM TKDQIANEKV
ALQKALLYYE SIHGRPVTKN ERQVMKPLYD RYRLVKQILS RANTIPIIGS PSSKRRSPLL
QPIIEGETAS FFKEIKEEEE GSEDDSNVKP DFMVTLKTDF SARCFLDQFE DDADGFISPM
DDKIPSKCSQ DTGLSNLHAA SIPELLEHLQ EMREEKKRIR KKLRDFEDNF FRQNGRNVQK
EDRTPMAEEY SEYKHIKAKL RLLEVLISKR DTDSKSM*
mutated AA sequence MACEIMPLQS SQEDERPLSP FYLSAHVPQV SNVSATGELL ERTIRSAVEQ HLFDVNNSGG
QSSEDSESGT LSASSATSAR QRRRQSKEQD EVRHGRDKGL INKENTPSGF NHLDDCILNT
QEVEKVHKNT FGCAGERSKP KRQKSSTKLS ELHDNQDGLV NMESLNSTRS HERTGPDDFE
WMSDERKGNE KDGGHTQHFE SPTMKIQEHP SLSDTKQQRN QDAGDQEESF VSEVPQSDLT
ALCDEKNWEE PIPAFSSWQR ENSDSDEAHL SPQAGRLIRQ LLDEDSDPML SPRFYAYGQS
RQYLDDTEVP PSPPNSHSFM RRRSSSLGSY DDEQEDLTPA QLTRRIQSLK KKIRKFEDRF
EEEKKYRPSH SDKAANPEVL KWTNDLAKFR RQLKESKLKI SEEDLTPRMR QRSNTLPKSF
GSQLEKEDEK KQELVDKAIK PSIEATLESI QRKLQEKRAE SSRPEDIKDM TKDQIANEKV
ALQKALLYYE SIHGRPVTKN ERQVMKPLYD RYRLVKQILS RANTIPIIGS PSSKRRSPLL
QPIIEGETAS FFKEIKEEEE GSEDDSNVKP DFMVTLKTDF SARCFLDQFE DDADGFISPM
DDKIPSKCSQ DTGLSNLHAA SIPELLEHLQ EMREEKKRIR KKLRDFEDNF FRQNGRNVQK
EDRTPMAEEY SEYKHIKAKL RLLEVLISKR DTDSKSM*
speed 0.79 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.99669292849934 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr4:89668859C>TN/A show variant in all transcripts   IGV
HGNC symbol FAM13A
Ensembl transcript ID ENST00000513837
Genbank transcript ID N/A
UniProt peptide O94988
alteration type single base exchange
alteration region CDS
DNA changes c.1243G>A
cDNA.1469G>A
g.363691G>A
AA changes V415I Score: 29 explain score(s)
position(s) of altered AA
if AA alteration in CDS
415
frameshift no
known variant Reference ID: rs7657817
databasehomozygous (T/T)heterozygousallele carriers
1000G2259551180
ExAC32231937822601
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)3.0110.283
1.6540.265
(flanking)-1.950.001
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Donor marginally increased363683wt: 0.9949 / mu: 0.9965 (marginal change - not scored)wt: AATAAAGCCCAGTGT
mu: AATAAAGCCCAGTAT
 TAAA|gccc
Donor marginally increased363688wt: 0.7050 / mu: 0.7418 (marginal change - not scored)wt: AGCCCAGTGTTGAAG
mu: AGCCCAGTATTGAAG
 CCCA|gtgt
Donor increased363691wt: 0.68 / mu: 0.96wt: CCAGTGTTGAAGCCA
mu: CCAGTATTGAAGCCA
 AGTG|ttga
distance from splice site 78
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      415QELVDKAIKPSVEATLESIQRKLQ
mutated  all conserved    415QELVDKAIKPSIEATLE
Ptroglodytes  all identical  ENSPTRG00000016278  769QELVDKAIKPSVEATLESIQRKL
Mmulatta  all identical  ENSMMUG00000010141  760QELVDKAIKPSVEATLESIQRKL
Fcatus  all identical  ENSFCAG00000015497  768QELMDKVIKPSVEATLESIQRKL
Mmusculus  all identical  ENSMUSG00000037709  439QELLDKAIRPSVEATLEGILRKL
Ggallus  all identical  ENSGALG00000010371  777QDLSDKSAKPAVEVTLDSIQKKL
Trubripes  not conserved  ENSTRUG00000012811  772----EKVPKPPAETT
Drerio  all identical  ENSDARG00000075564  814-----KAPKPPVESTLETVTN
Dmelanogaster  all conserved  FBgn0028494  565-----------MKATLAEIEQNL
Celegans  no homologue    
Xtropicalis  all conserved  ENSXETG00000023661  768PETVEKPAKPSMEATMEAIQ
protein features
start (aa)end (aa)featuredetails 
509509CONFLICTS -> T (in Ref. 2; AK027138).might get lost (downstream of altered splice site)
655655MOD_RESPhosphoserine (By similarity).might get lost (downstream of altered splice site)
666730COILEDPotential.might get lost (downstream of altered splice site)
732732MOD_RESPhosphothreonine (By similarity).might get lost (downstream of altered splice site)
740740CONFLICTN -> Y (in Ref. 2; BAG59483).might get lost (downstream of altered splice site)
946978COILEDPotential.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2010 / 2010
position (AA) of stopcodon in wt / mu AA sequence 670 / 670
position of stopcodon in wt / mu cDNA 2236 / 2236
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 227 / 227
chromosome 4
strand -1
last intron/exon boundary 2110
theoretical NMD boundary in CDS 1833
length of CDS 2010
coding sequence (CDS) position 1243
cDNA position
(for ins/del: last normal base / first normal base)
1469
gDNA position
(for ins/del: last normal base / first normal base)
363691
chromosomal position
(for ins/del: last normal base / first normal base)
89668859
original gDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered gDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
original cDNA sequence snippet ATAAAGCAATAAAGCCCAGTGTTGAAGCCACATTGGAATCT
altered cDNA sequence snippet ATAAAGCAATAAAGCCCAGTATTGAAGCCACATTGGAATCT
wildtype AA sequence MACEIMPLQR LLERTIRSAV EQHLFDVNNS GGQSSEDSES GTLSASSATS ARQRRRQSKE
QDEVRHGRDK GLINKENTPS GFNHLDDCIL NTQEVEKVHK NTFGCAGERS KPKRQKSSTK
LSELHDNQDG LVNMESLNST RSHERTGPDD FEWMSDERKG NEKDGGHTQH FESPTMKIQE
HPSLSDTKQQ RNQDAGDQEE SFVSEVPQSD LTALCDEKNW EEPIPAFSSW QRENSDSDEA
HLSPQAGRLI RQLLDEDSDP MLSPRFYAYG QSRQYLDDTE VPPSPPNSHS FMRRRSSSLG
SYDDEQEDLT PAQLTRRIQS LKKKIRKFED RFEEEKKYRP SHSDKAANPE VLKWTNDLAK
FRRQLKESKL KISEEDLTPR MRQRSNTLPK SFGSQLEKED EKKQELVDKA IKPSVEATLE
SIQRKLQEKR AESSRPEDIK DMTKDQIANE KVALQKALLY YESIHGRPVT KNERQVMKPL
YDRYRLVKQI LSRANTIPII GSPSSKRRSP LLQPIIEGET ASFFKEIKEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
mutated AA sequence MACEIMPLQR LLERTIRSAV EQHLFDVNNS GGQSSEDSES GTLSASSATS ARQRRRQSKE
QDEVRHGRDK GLINKENTPS GFNHLDDCIL NTQEVEKVHK NTFGCAGERS KPKRQKSSTK
LSELHDNQDG LVNMESLNST RSHERTGPDD FEWMSDERKG NEKDGGHTQH FESPTMKIQE
HPSLSDTKQQ RNQDAGDQEE SFVSEVPQSD LTALCDEKNW EEPIPAFSSW QRENSDSDEA
HLSPQAGRLI RQLLDEDSDP MLSPRFYAYG QSRQYLDDTE VPPSPPNSHS FMRRRSSSLG
SYDDEQEDLT PAQLTRRIQS LKKKIRKFED RFEEEKKYRP SHSDKAANPE VLKWTNDLAK
FRRQLKESKL KISEEDLTPR MRQRSNTLPK SFGSQLEKED EKKQELVDKA IKPSIEATLE
SIQRKLQEKR AESSRPEDIK DMTKDQIANE KVALQKALLY YESIHGRPVT KNERQVMKPL
YDRYRLVKQI LSRANTIPII GSPSSKRRSP LLQPIIEGET ASFFKEIKEE EEGSEDDSNV
KPDFMVTLKT DFSARCFLDQ FEDDADGFIS PMDDKIPSKC SQDTGLSNLH AASIPELLEH
LQEMREEKKR IRKKLRDFED NFFRQNGRNV QKEDRTPMAE EYSEYKHIKA KLRLLEVLIS
KRDTDSKSM*
speed 0.40 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table

Problems