Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 8 transcript(s)...
Querying Taster for transcript #1: ENST00000397256
Querying Taster for transcript #2: ENST00000426895
Querying Taster for transcript #3: ENST00000383827
Querying Taster for transcript #4: ENST00000455274
Querying Taster for transcript #5: ENST00000430793
Querying Taster for transcript #6: ENST00000547186
Querying Taster for transcript #7: ENST00000397241
Querying Taster for transcript #8: ENST00000427853
MT speed 0 s - this script 6.706188 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
ARPC4-TTLL3polymorphism_automatic2.17511170186313e-08simple_aaeaffectedM563Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic2.17511170186313e-08simple_aaeaffectedM645Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM290Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM290Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM502Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM290Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM290Rsingle base exchangers2290305show file
TTLL3polymorphism_automatic3.61198689846631e-08simple_aaeaffectedM290Rsingle base exchangers2290305show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999978248883 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol ARPC4-TTLL3
Ensembl transcript ID ENST00000397256
Genbank transcript ID NM_001198793
UniProt peptide N/A
alteration type single base exchange
alteration region CDS
DNA changes c.1688T>G
cDNA.1696T>G
g.36233T>G
AA changes M563R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
563
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased36226wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained362270.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      563QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    563QADTLRVVIDRRLDRNCDTGAFE
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAFE
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAFE
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696LRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELGNFE
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIGAFE
protein features N/A
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1878 / 1878
position (AA) of stopcodon in wt / mu AA sequence 626 / 626
position of stopcodon in wt / mu cDNA 1886 / 1886
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 9 / 9
chromosome 3
strand 1
last intron/exon boundary 1746
theoretical NMD boundary in CDS 1687
length of CDS 1878
coding sequence (CDS) position 1688
cDNA position
(for ins/del: last normal base / first normal base)
1696
gDNA position
(for ins/del: last normal base / first normal base)
36233
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MTATLRPYLS AVRATLQAAL CLENFSSQVV ERHNKPEVEV RSSKELLLQP VTISRNEKEK
VLIEGSINSV RVSIAVKQAD EIEKILCHKF MRFMMMRAEN FFILRRKPVE QKKIFTIQGC
YPVIRCLLRR RGWVEKKMVH RSGPTLLPPQ KDLDSSAMGD SDTTEDEDED EDEEFQPSQL
FDFDDLLKFD DLDGTHALMV GLCLNLRNLP WFDEVDANSF FPRCYCLGAE DDKKAFIGDK
QPKKQEKNPV LVSPEFVDEA LCACEEYLSN LAHMDIDKDL EAPLYLTPEG WSLFLQRYYQ
VVHEGAELRH LDTQVQRCED ILQQLQAVVP QIDMEGDRNI WIVKPGAKSR GRGIMCMDHL
EEMLKLVNGN PVVMKDGKWV VQKYIERPLL IFGTKFDLRQ WFLVTDWNPL TVWFYRDSYI
RFSTQPFSLK NLDNSVHLCN NSIQKHLENS CHRHPLLPPD NMWSSQRFQA HLQEMGAPNA
WSTIIVPGMK DAVIHALQTS QDTVQCRKAS FELYGADFVF GEDFQPWLIE INASPTMAPS
TAVTARLCAG VQADTLRVVI DRMLDRNCDT GAFELIYKQP VTTSPASTPR PSCLLPMYSD
TRARSSDDST ASWWALRPCR PQARP*
mutated AA sequence MTATLRPYLS AVRATLQAAL CLENFSSQVV ERHNKPEVEV RSSKELLLQP VTISRNEKEK
VLIEGSINSV RVSIAVKQAD EIEKILCHKF MRFMMMRAEN FFILRRKPVE QKKIFTIQGC
YPVIRCLLRR RGWVEKKMVH RSGPTLLPPQ KDLDSSAMGD SDTTEDEDED EDEEFQPSQL
FDFDDLLKFD DLDGTHALMV GLCLNLRNLP WFDEVDANSF FPRCYCLGAE DDKKAFIGDK
QPKKQEKNPV LVSPEFVDEA LCACEEYLSN LAHMDIDKDL EAPLYLTPEG WSLFLQRYYQ
VVHEGAELRH LDTQVQRCED ILQQLQAVVP QIDMEGDRNI WIVKPGAKSR GRGIMCMDHL
EEMLKLVNGN PVVMKDGKWV VQKYIERPLL IFGTKFDLRQ WFLVTDWNPL TVWFYRDSYI
RFSTQPFSLK NLDNSVHLCN NSIQKHLENS CHRHPLLPPD NMWSSQRFQA HLQEMGAPNA
WSTIIVPGMK DAVIHALQTS QDTVQCRKAS FELYGADFVF GEDFQPWLIE INASPTMAPS
TAVTARLCAG VQADTLRVVI DRRLDRNCDT GAFELIYKQP VTTSPASTPR PSCLLPMYSD
TRARSSDDST ASWWALRPCR PQARP*
speed 0.92 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999978248883 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000426895
Genbank transcript ID NM_001025930
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.1934T>G
cDNA.1953T>G
g.21261T>G
AA changes M645R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
645
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      645QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    645QADTLRVVIDRRLDRNCDTGAFE
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAFE
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAFE
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576RVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELGNFE
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIGAFE
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2748 / 2748
position (AA) of stopcodon in wt / mu AA sequence 916 / 916
position of stopcodon in wt / mu cDNA 2767 / 2767
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 20 / 20
chromosome 3
strand 1
last intron/exon boundary 2372
theoretical NMD boundary in CDS 2302
length of CDS 2748
coding sequence (CDS) position 1934
cDNA position
(for ins/del: last normal base / first normal base)
1953
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MQGPDAPLLL SARELGPGRR GSASWYRQEG GAVCNWLRKP QPLEPRTSFP SARRSEFRPP
RRLPWAGPAS AQSEEGHAGG RCQAGSPAPA RRLSGAFKTL VPGTHAQGAS DTHPLGPPHT
PVLDPSPQDG FPVLWRGSSK ASHMNRLRNA KIYVERAVKQ KKIFTIQGCY PVIRCLLRRR
GWVEKKMVHR SGPTLLPPQK DLDSSAMGDS DTTEDEDEDE DEEFQPSQLF DFDDLLKFDD
LDGTHALMVG LCLNLRNLPW FDEVDANSFF PRCYCLGAED DKKAFIEDFW LTAARNVLKL
VVKSEWKSYP IQAVEEEASG DKQPKKQEKN PVLVSPEFVD EALCACEEYL SNLAHMDIDK
DLEAPLYLTP EGWSLFLQRY YQVVHEGAEL RHLDTQVQRC EDILQQLQAV VPQIDMEGDR
NIWIVKPGAK SRGRGIMCMD HLEEMLKLVN GNPVVMKDGK WVVQKYIERP LLIFGTKFDL
RQWFLVTDWN PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCHRHPLLP
PDNMWSSQRF QAHLQEMGAP NAWSTIIVPG MKDAVIHALQ TSQDTVQCRK ASFELYGADF
VFGEDFQPWL IEINASPTMA PSTAVTARLC AGVQADTLRV VIDRMLDRNC DTGAFELIYK
QPAVEVPQYV GIRLLVEGFT IKKPMAMCHR RMGVRPAVPL LTQRGSGEAR HHFPSLHTKA
QLPSPHVLRH QGQVLRRQHS KLVGTKALST TGKALRTLPT AKVFISLPPN LDFKVAPSIL
KPRKAPALLC LRGPQLEVPC CLCPLKSEQF LAPVGRSRPK ANSRPDCDKP RAEACPMKRL
SPLKPLPLVG TFQRRRGLGD MKLGKPLLRF PTALVLDPTP NKKKQVKYLG LDSIAVGGSR
VDGARPCTPG STARA*
mutated AA sequence MQGPDAPLLL SARELGPGRR GSASWYRQEG GAVCNWLRKP QPLEPRTSFP SARRSEFRPP
RRLPWAGPAS AQSEEGHAGG RCQAGSPAPA RRLSGAFKTL VPGTHAQGAS DTHPLGPPHT
PVLDPSPQDG FPVLWRGSSK ASHMNRLRNA KIYVERAVKQ KKIFTIQGCY PVIRCLLRRR
GWVEKKMVHR SGPTLLPPQK DLDSSAMGDS DTTEDEDEDE DEEFQPSQLF DFDDLLKFDD
LDGTHALMVG LCLNLRNLPW FDEVDANSFF PRCYCLGAED DKKAFIEDFW LTAARNVLKL
VVKSEWKSYP IQAVEEEASG DKQPKKQEKN PVLVSPEFVD EALCACEEYL SNLAHMDIDK
DLEAPLYLTP EGWSLFLQRY YQVVHEGAEL RHLDTQVQRC EDILQQLQAV VPQIDMEGDR
NIWIVKPGAK SRGRGIMCMD HLEEMLKLVN GNPVVMKDGK WVVQKYIERP LLIFGTKFDL
RQWFLVTDWN PLTVWFYRDS YIRFSTQPFS LKNLDNSVHL CNNSIQKHLE NSCHRHPLLP
PDNMWSSQRF QAHLQEMGAP NAWSTIIVPG MKDAVIHALQ TSQDTVQCRK ASFELYGADF
VFGEDFQPWL IEINASPTMA PSTAVTARLC AGVQADTLRV VIDRRLDRNC DTGAFELIYK
QPAVEVPQYV GIRLLVEGFT IKKPMAMCHR RMGVRPAVPL LTQRGSGEAR HHFPSLHTKA
QLPSPHVLRH QGQVLRRQHS KLVGTKALST TGKALRTLPT AKVFISLPPN LDFKVAPSIL
KPRKAPALLC LRGPQLEVPC CLCPLKSEQF LAPVGRSRPK ANSRPDCDKP RAEACPMKRL
SPLKPLPLVG TFQRRRGLGD MKLGKPLLRF PTALVLDPTP NKKKQVKYLG LDSIAVGGSR
VDGARPCTPG STARA*
speed 0.94 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000383827
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.869T>G
cDNA.3150T>G
g.21261T>G
AA changes M290R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
290
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      290QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    290QADTLRVVIDRRLDRNCDTGAF
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAF
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAF
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIG
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
469469MUTAGENE->G: Abolishes monoglycylase activity.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1059 / 1059
position (AA) of stopcodon in wt / mu AA sequence 353 / 353
position of stopcodon in wt / mu cDNA 3340 / 3340
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 2282 / 2282
chromosome 3
strand 1
last intron/exon boundary 3200
theoretical NMD boundary in CDS 868
length of CDS 1059
coding sequence (CDS) position 869
cDNA position
(for ins/del: last normal base / first normal base)
3150
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRM LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
mutated AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRR LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
speed 0.73 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000455274
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.869T>G
cDNA.2219T>G
g.21261T>G
AA changes M290R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
290
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      290QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    290QADTLRVVIDRRLDRNCDTGAF
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAF
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAF
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIG
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
469469MUTAGENE->G: Abolishes monoglycylase activity.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 981 / 981
position (AA) of stopcodon in wt / mu AA sequence 327 / 327
position of stopcodon in wt / mu cDNA 2331 / 2331
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 1351 / 1351
chromosome 3
strand 1
last intron/exon boundary 2269
theoretical NMD boundary in CDS 868
length of CDS 981
coding sequence (CDS) position 869
cDNA position
(for ins/del: last normal base / first normal base)
2219
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRM LDRNCDTGAF
ELIYKQGPAP NMQVSPERNA PLCPAP*
mutated AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRR LDRNCDTGAF
ELIYKQGPAP NMQVSPERNA PLCPAP*
speed 0.95 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000547186
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.1505T>G
cDNA.1721T>G
g.21261T>G
AA changes M502R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
502
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      502QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    502QADTLRVVIDRRLDRNCDTGAFE
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAFE
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAFE
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696LRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTG
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551TLRIVLDRKLDRNCDIGAFE
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2319 / 2319
position (AA) of stopcodon in wt / mu AA sequence 773 / 773
position of stopcodon in wt / mu cDNA 2535 / 2535
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 217 / 217
chromosome 3
strand 1
last intron/exon boundary 2140
theoretical NMD boundary in CDS 1873
length of CDS 2319
coding sequence (CDS) position 1505
cDNA position
(for ins/del: last normal base / first normal base)
1721
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MNRLRNAKIY VERAVKQKKI FTIQGCYPVI RCLLRRRGWV EKKMVHRSGP TLLPPQKDLD
SSAMGDSDTT EDEDEDEDEE FQPSQLFDFD DLLKFDDLDG THALMVGLCL NLRNLPWFDE
VDANSFFPRC YCLGAEDDKK AFIEDFWLTA ARNVLKLVVK SEWKSYPIQA VEEEASGDKQ
PKKQEKNPVL VSPEFVDEAL CACEEYLSNL AHMDIDKDLE APLYLTPEGW SLFLQRYYQV
VHEGAELRHL DTQVQRCEDI LQQLQAVVPQ IDMEGDRNIW IVKPGAKSRG RGIMCMDHLE
EMLKLVNGNP VVMKDGKWVV QKYIERPLLI FGTKFDLRQW FLVTDWNPLT VWFYRDSYIR
FSTQPFSLKN LDNSVHLCNN SIQKHLENSC HRHPLLPPDN MWSSQRFQAH LQEMGAPNAW
STIIVPGMKD AVIHALQTSQ DTVQCRKASF ELYGADFVFG EDFQPWLIEI NASPTMAPST
AVTARLCAGV QADTLRVVID RMLDRNCDTG AFELIYKQPA VEVPQYVGIR LLVEGFTIKK
PMAMCHRRMG VRPAVPLLTQ RGSGEARHHF PSLHTKAQLP SPHVLRHQGQ VLRRQHSKLV
GTKALSTTGK ALRTLPTAKV FISLPPNLDF KVAPSILKPR KAPALLCLRG PQLEVPCCLC
PLKSEQFLAP VGRSRPKANS RPDCDKPRAE ACPMKRLSPL KPLPLVGTFQ RRRGLGDMKL
GKPLLRFPTA LVLDPTPNKK KQVKYLGLDS IAVGGSRVDG ARPCTPGSTA RA*
mutated AA sequence MNRLRNAKIY VERAVKQKKI FTIQGCYPVI RCLLRRRGWV EKKMVHRSGP TLLPPQKDLD
SSAMGDSDTT EDEDEDEDEE FQPSQLFDFD DLLKFDDLDG THALMVGLCL NLRNLPWFDE
VDANSFFPRC YCLGAEDDKK AFIEDFWLTA ARNVLKLVVK SEWKSYPIQA VEEEASGDKQ
PKKQEKNPVL VSPEFVDEAL CACEEYLSNL AHMDIDKDLE APLYLTPEGW SLFLQRYYQV
VHEGAELRHL DTQVQRCEDI LQQLQAVVPQ IDMEGDRNIW IVKPGAKSRG RGIMCMDHLE
EMLKLVNGNP VVMKDGKWVV QKYIERPLLI FGTKFDLRQW FLVTDWNPLT VWFYRDSYIR
FSTQPFSLKN LDNSVHLCNN SIQKHLENSC HRHPLLPPDN MWSSQRFQAH LQEMGAPNAW
STIIVPGMKD AVIHALQTSQ DTVQCRKASF ELYGADFVFG EDFQPWLIEI NASPTMAPST
AVTARLCAGV QADTLRVVID RRLDRNCDTG AFELIYKQPA VEVPQYVGIR LLVEGFTIKK
PMAMCHRRMG VRPAVPLLTQ RGSGEARHHF PSLHTKAQLP SPHVLRHQGQ VLRRQHSKLV
GTKALSTTGK ALRTLPTAKV FISLPPNLDF KVAPSILKPR KAPALLCLRG PQLEVPCCLC
PLKSEQFLAP VGRSRPKANS RPDCDKPRAE ACPMKRLSPL KPLPLVGTFQ RRRGLGDMKL
GKPLLRFPTA LVLDPTPNKK KQVKYLGLDS IAVGGSRVDG ARPCTPGSTA RA*
speed 0.78 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000430793
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.869T>G
cDNA.1228T>G
g.21261T>G
AA changes M290R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
290
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      290QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    290QADTLRVVIDRRLDRNCDTGAF
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAF
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAF
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIG
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
469469MUTAGENE->G: Abolishes monoglycylase activity.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1305 / 1305
position (AA) of stopcodon in wt / mu AA sequence 435 / 435
position of stopcodon in wt / mu cDNA 1664 / 1664
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 360 / 360
chromosome 3
strand 1
last intron/exon boundary 1420
theoretical NMD boundary in CDS 1010
length of CDS 1305
coding sequence (CDS) position 869
cDNA position
(for ins/del: last normal base / first normal base)
1228
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRM LDRNCDTGAF
ELIYKQPAVE VPQYVGIRLL VEGFTIKKPM AMCHRRMGVR PAVPLLTQRG SGEARHHFPS
LHTKAQLPSP HVLRHQGQVL RRQHSKLVGT KALSTTGKAL RTLPTAKVFI SLPPNLDFKV
APSILKPRKV GLDL*
mutated AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRR LDRNCDTGAF
ELIYKQPAVE VPQYVGIRLL VEGFTIKKPM AMCHRRMGVR PAVPLLTQRG SGEARHHFPS
LHTKAQLPSP HVLRHQGQVL RRQHSKLVGT KALSTTGKAL RTLPTAKVFI SLPPNLDFKV
APSILKPRKV GLDL*
speed 0.97 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000397241
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.869T>G
cDNA.1721T>G
g.21261T>G
AA changes M290R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
290
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      290QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    290QADTLRVVIDRRLDRNCDTGAF
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAF
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAF
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIG
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
469469MUTAGENE->G: Abolishes monoglycylase activity.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1059 / 1059
position (AA) of stopcodon in wt / mu AA sequence 353 / 353
position of stopcodon in wt / mu cDNA 1911 / 1911
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 853 / 853
chromosome 3
strand 1
last intron/exon boundary 1998
theoretical NMD boundary in CDS 1095
length of CDS 1059
coding sequence (CDS) position 869
cDNA position
(for ins/del: last normal base / first normal base)
1721
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRM LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
mutated AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRR LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
speed 0.97 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999963880131 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr3:9871030T>GN/A show variant in all transcripts   IGV
HGNC symbol TTLL3
Ensembl transcript ID ENST00000427853
Genbank transcript ID N/A
UniProt peptide Q9Y4R7
alteration type single base exchange
alteration region CDS
DNA changes c.869T>G
cDNA.1371T>G
g.21261T>G
AA changes M290R Score: 91 explain score(s)
position(s) of altered AA
if AA alteration in CDS
290
frameshift no
known variant Reference ID: rs2290305
databasehomozygous (G/G)heterozygousallele carriers
1000G67610611737
ExAC23140-135139627
regulatory features H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)0.4510.44
1.6980.425
(flanking)0.3550.16
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased21254wt: 0.32 / mu: 0.41wt: ACACCCTGCGCGTGGTCATTGACCGGATGCTGGACCGCAAC
mu: ACACCCTGCGCGTGGTCATTGACCGGAGGCTGGACCGCAAC
 attg|ACCG
Donor gained212550.97mu: CATTGACCGGAGGCT TTGA|ccgg
distance from splice site 50
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      290QADTLRVVIDRMLDRNCDTGAFEL
mutated  not conserved    290QADTLRVVIDRRLDRNCDTGAF
Ptroglodytes  not conserved  ENSPTRG00000034246  502QADTLRVVIDRRLDRNCDTGAF
Mmulatta  not conserved  ENSMMUG00000004539  502QADTLRVVIDRRLDHNCDTGAF
Fcatus  no homologue    
Mmusculus  not conserved  ENSMUSG00000030276  696QADTLRVVIDRRLDRSCDTGAFE
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000053728  576QEDTLRVVLDRRSERNTDTGGFQ
Dmelanogaster  not conserved  FBgn0031854  637LEDVVKVVIDRRTDPKAELG
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000023542  551QEDTLRIVLDRKLDRNCDIG
protein features
start (aa)end (aa)featuredetails 
151510DOMAINTTL.lost
469469MUTAGENE->G: Abolishes monoglycylase activity.might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1059 / 1059
position (AA) of stopcodon in wt / mu AA sequence 353 / 353
position of stopcodon in wt / mu cDNA 1561 / 1561
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 503 / 503
chromosome 3
strand 1
last intron/exon boundary 1421
theoretical NMD boundary in CDS 868
length of CDS 1059
coding sequence (CDS) position 869
cDNA position
(for ins/del: last normal base / first normal base)
1371
gDNA position
(for ins/del: last normal base / first normal base)
21261
chromosomal position
(for ins/del: last normal base / first normal base)
9871030
original gDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered gDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
original cDNA sequence snippet GCGCGTGGTCATTGACCGGATGCTGGACCGCAACTGTGACA
altered cDNA sequence snippet GCGCGTGGTCATTGACCGGAGGCTGGACCGCAACTGTGACA
wildtype AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRM LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
mutated AA sequence MDIDKDLEAP LYLTPEGWSL FLQRYYQVVH EGAELRHLDT QVQRCEDILQ QLQAVVPQID
MEGDRNIWIV KPGAKSRGRG IMCMDHLEEM LKLVNGNPVV MKDGKWVVQK YIERPLLIFG
TKFDLRQWFL VTDWNPLTVW FYRDSYIRFS TQPFSLKNLD NSVHLCNNSI QKHLENSCHR
HPLLPPDNMW SSQRFQAHLQ EMGAPNAWST IIVPGMKDAV IHALQTSQDT VQCRKASFEL
YGADFVFGED FQPWLIEINA SPTMAPSTAV TARLCAGVQA DTLRVVIDRR LDRNCDTGAF
ELIYKQPVTT SPASTPRPSC LLPMYSDTRA RSSDDSTASW WALRPCRPQA RP*
speed 0.99 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems