Yum, tasty mutations...

MutationTaster - study a chromosomal position

MTQE documentation
NEVER press reload or F5 - unless you want to start from the very beginning.
input seems to be ok - now mapping the variant to the different transcripts...
found 4 transcript(s)...
Querying Taster for transcript #1: ENST00000505113
Querying Taster for transcript #2: ENST00000316418
Querying Taster for transcript #3: ENST00000512529
Querying Taster for transcript #4: ENST00000506456
MT speed 4.01 s - this script 5.093223 s

Results


genesymbolpredictionprobabilitymodelprediction
problem
splicingClinVaramino acid changesvariant typedbSNP IDprotein lengthfile
AHRRpolymorphism_automatic2.59792187762287e-14simple_aaeD473Hsingle base exchangers34453673show file
AHRRpolymorphism_automatic2.59792187762287e-14simple_aaeD483Hsingle base exchangers34453673show file
AHRRpolymorphism_automatic3.39728245535298e-14simple_aaeD645Hsingle base exchangers34453673show file
AHRRpolymorphism_automatic3.39728245535298e-14simple_aaeD627Hsingle base exchangers34453673show file

Taster files

Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999974 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:434722G>CN/A show variant in all transcripts   IGV
HGNC symbol AHRR
Ensembl transcript ID ENST00000512529
Genbank transcript ID N/A
UniProt peptide A9YTQ3
alteration type single base exchange
alteration region CDS
DNA changes c.1417G>C
cDNA.1626G>C
g.130432G>C
AA changes D473H Score: 81 explain score(s)
position(s) of altered AA
if AA alteration in CDS
473
frameshift no
known variant Reference ID: rs34453673
databasehomozygous (C/C)heterozygousallele carriers
1000G125526651
ExAC177175539324
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
PolII, Polymerase, RNA Polymerase II
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3950
0.70.001
(flanking)0.0240
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 287
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      473HPAHCACLEPTDGLPQSEPPHQLC
mutated  not conserved    473HPAHCACLEPTHGLPQSEP
Ptroglodytes  no homologue    
Mmulatta  not conserved  ENSMMUG00000000752  655HPAHCACLEPMHGLAQPEPPHQL
Fcatus  not conserved  ENSFCAG00000015430  594RPAHCACLQHVRGLPEPDPPRHL
Mmusculus  not conserved  ENSMUSG00000021575  633YSAHCTCLDP-------EPPHHFFM
Ggallus  not conserved  ENSGALG00000013402  660CPQNSSACLESLPDQPHTEGYGQFYS
Trubripes  no alignment  ENSTRUG00000003745  n/a
Drerio  no alignment  ENSDARG00000052618  n/a
Dmelanogaster  no alignment  FBgn0003513  n/a
Celegans  no alignment  C41G7.5  n/a
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1644 / 1644
position (AA) of stopcodon in wt / mu AA sequence 548 / 548
position of stopcodon in wt / mu cDNA 1853 / 1853
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 210 / 210
chromosome 5
strand 1
last intron/exon boundary 872
theoretical NMD boundary in CDS 612
length of CDS 1644
coding sequence (CDS) position 1417
cDNA position
(for ins/del: last normal base / first normal base)
1626
gDNA position
(for ins/del: last normal base / first normal base)
130432
chromosomal position
(for ins/del: last normal base / first normal base)
434722
original gDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered gDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
original cDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered cDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
wildtype AA sequence MHQNIYDYIH VDDRQDFCRQ LHWAMDPPQV VFGQPPPLET GDDAILGRLL RAQEWGTGTP
TEYSAFLTRC FICRVRCLLD STSGFLTMQF QGKLKFLFGQ KKKAPSGAML PPRLSLFCIA
APVLLPSAAE MKMRSALLRA KPRADTAATA DAKVKATTSL CESELHGKPN YSAGRSSRES
GVLVLREQTD AGRWAQVPAR APCLCLRGGP DLVLDPKGGS GDREEEQHRM LSRASGVTGR
RETPGPTKPL PWTAGKHSED GARPRLQPSK NDPPSLRPMP RGSCLPCPCV QGTFRNSPIS
HPPSPSPSAY SSRTSRPMRD VGEDQVHPPL CHFPQRSLQH QLPQPGAQRF ATRGYPMEDM
KLQGVPMPPG DLCGPTLLLD VSIKMEKDSG CEGAADGCVP SQVWLGASDR SHPATFPTRM
HLKTEPDSRQ QVYISHLGHG VRGAQPHGRA TAGRSRELTP FHPAHCACLE PTDGLPQSEP
PHQLCARGRG EQSCTCRAAE AAPVVKREPL DSPQWATHSQ GMVPGMLPKS ALATLVPPQA
SGCTFLP*
mutated AA sequence MHQNIYDYIH VDDRQDFCRQ LHWAMDPPQV VFGQPPPLET GDDAILGRLL RAQEWGTGTP
TEYSAFLTRC FICRVRCLLD STSGFLTMQF QGKLKFLFGQ KKKAPSGAML PPRLSLFCIA
APVLLPSAAE MKMRSALLRA KPRADTAATA DAKVKATTSL CESELHGKPN YSAGRSSRES
GVLVLREQTD AGRWAQVPAR APCLCLRGGP DLVLDPKGGS GDREEEQHRM LSRASGVTGR
RETPGPTKPL PWTAGKHSED GARPRLQPSK NDPPSLRPMP RGSCLPCPCV QGTFRNSPIS
HPPSPSPSAY SSRTSRPMRD VGEDQVHPPL CHFPQRSLQH QLPQPGAQRF ATRGYPMEDM
KLQGVPMPPG DLCGPTLLLD VSIKMEKDSG CEGAADGCVP SQVWLGASDR SHPATFPTRM
HLKTEPDSRQ QVYISHLGHG VRGAQPHGRA TAGRSRELTP FHPAHCACLE PTHGLPQSEP
PHQLCARGRG EQSCTCRAAE AAPVVKREPL DSPQWATHSQ GMVPGMLPKS ALATLVPPQA
SGCTFLP*
speed 1.05 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999974 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:434722G>CN/A show variant in all transcripts   IGV
HGNC symbol AHRR
Ensembl transcript ID ENST00000506456
Genbank transcript ID N/A
UniProt peptide A9YTQ3
alteration type single base exchange
alteration region CDS
DNA changes c.1447G>C
cDNA.1847G>C
g.130432G>C
AA changes D483H Score: 81 explain score(s)
position(s) of altered AA
if AA alteration in CDS
483
frameshift no
known variant Reference ID: rs34453673
databasehomozygous (C/C)heterozygousallele carriers
1000G125526651
ExAC177175539324
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
PolII, Polymerase, RNA Polymerase II
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3950
0.70.001
(flanking)0.0240
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 504
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      483HPAHCACLEPTDGLPQSEPPHQLC
mutated  not conserved    483PTHGLPQSEPPHQL
Ptroglodytes  no homologue    
Mmulatta  not conserved  ENSMMUG00000000752  655HPAHCACLEPMHGLAQPEPPHQL
Fcatus  not conserved  ENSFCAG00000015430  594RPAHCACLQHVRGLPEPDPPRHL
Mmusculus  not conserved  ENSMUSG00000021575  633YSAHCTCLDP-------EPPHHFFM
Ggallus  not conserved  ENSGALG00000013402  660CPQNSSACLESLPDQPHTEGYGQFYS
Trubripes  no alignment  ENSTRUG00000003745  n/a
Drerio  no alignment  ENSDARG00000052618  n/a
Dmelanogaster  no alignment  FBgn0003513  n/a
Celegans  no alignment  C41G7.5  n/a
Xtropicalis  no homologue    
protein features no protein features affected
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 1674 / 1674
position (AA) of stopcodon in wt / mu AA sequence 558 / 558
position of stopcodon in wt / mu cDNA 2074 / 2074
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 401 / 401
chromosome 5
strand 1
last intron/exon boundary 1093
theoretical NMD boundary in CDS 642
length of CDS 1674
coding sequence (CDS) position 1447
cDNA position
(for ins/del: last normal base / first normal base)
1847
gDNA position
(for ins/del: last normal base / first normal base)
130432
chromosomal position
(for ins/del: last normal base / first normal base)
434722
original gDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered gDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
original cDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered cDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
wildtype AA sequence MRGRGMPTDV MHQNIYDYIH VDDRQDFCRQ LHWAMDPPQV VFGQPPPLET GDDAILGRLL
RAQEWGTGTP TEYSAFLTRC FICRVRCLLD STSGFLTMQF QGKLKFLFGQ KKKAPSGAML
PPRLSLFCIA APVLLPSAAE MKMRSALLRA KPRADTAATA DAKVKATTSL CESELHGKPN
YSAGRSSRES GVLVLREQTD AGRWAQVPAR APCLCLRGGP DLVLDPKGGS GDREEEQHRM
LSRASGVTGR RETPGPTKPL PWTAGKHSED GARPRLQPSK NDPPSLRPMP RGSCLPCPCV
QGTFRNSPIS HPPSPSPSAY SSRTSRPMRD VGEDQVHPPL CHFPQRSLQH QLPQPGAQRF
ATRGYPMEDM KLQGVPMPPG DLCGPTLLLD VSIKMEKDSG CEGAADGCVP SQVWLGASDR
SHPATFPTRM HLKTEPDSRQ QVYISHLGHG VRGAQPHGRA TAGRSRELTP FHPAHCACLE
PTDGLPQSEP PHQLCARGRG EQSCTCRAAE AAPVVKREPL DSPQWATHSQ GMVPGMLPKS
ALATLVPPQA SGCTFLP*
mutated AA sequence MRGRGMPTDV MHQNIYDYIH VDDRQDFCRQ LHWAMDPPQV VFGQPPPLET GDDAILGRLL
RAQEWGTGTP TEYSAFLTRC FICRVRCLLD STSGFLTMQF QGKLKFLFGQ KKKAPSGAML
PPRLSLFCIA APVLLPSAAE MKMRSALLRA KPRADTAATA DAKVKATTSL CESELHGKPN
YSAGRSSRES GVLVLREQTD AGRWAQVPAR APCLCLRGGP DLVLDPKGGS GDREEEQHRM
LSRASGVTGR RETPGPTKPL PWTAGKHSED GARPRLQPSK NDPPSLRPMP RGSCLPCPCV
QGTFRNSPIS HPPSPSPSAY SSRTSRPMRD VGEDQVHPPL CHFPQRSLQH QLPQPGAQRF
ATRGYPMEDM KLQGVPMPPG DLCGPTLLLD VSIKMEKDSG CEGAADGCVP SQVWLGASDR
SHPATFPTRM HLKTEPDSRQ QVYISHLGHG VRGAQPHGRA TAGRSRELTP FHPAHCACLE
PTHGLPQSEP PHQLCARGRG EQSCTCRAAE AAPVVKREPL DSPQWATHSQ GMVPGMLPKS
ALATLVPPQA SGCTFLP*
speed 0.96 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999966 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:434722G>CN/A show variant in all transcripts   IGV
HGNC symbol AHRR
Ensembl transcript ID ENST00000316418
Genbank transcript ID NM_020731
UniProt peptide A9YTQ3
alteration type single base exchange
alteration region CDS
DNA changes c.1933G>C
cDNA.1977G>C
g.130432G>C
AA changes D645H Score: 81 explain score(s)
position(s) of altered AA
if AA alteration in CDS
645
frameshift no
known variant Reference ID: rs34453673
databasehomozygous (C/C)heterozygousallele carriers
1000G125526651
ExAC177175539324
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
PolII, Polymerase, RNA Polymerase II
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3950
0.70.001
(flanking)0.0240
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 755
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      645HPAHCACLEPTDGLPQSEPPHQLC
mutated  not conserved    645HPAHCACLEPTHGLPQSEPPHQL
Ptroglodytes  no homologue    
Mmulatta  not conserved  ENSMMUG00000000752  655HPAHCACLEPMHGLAQPEPPHQL
Fcatus  not conserved  ENSFCAG00000015430  594RPAHCACLQHVRGLPEPDPPRHL
Mmusculus  not conserved  ENSMUSG00000021575  633-------EPPHHFFM
Ggallus  not conserved  ENSGALG00000013402  660CPQNSSACLESLPDQPHTEGYGQFYS
Trubripes  no alignment  ENSTRUG00000003745  n/a
Drerio  no alignment  ENSDARG00000052618  n/a
Dmelanogaster  no alignment  FBgn0003513  n/a
Celegans  no alignment  C41G7.5  n/a
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
551701REGIONNeeded for transcriptional repression (By similarity).lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2160 / 2160
position (AA) of stopcodon in wt / mu AA sequence 720 / 720
position of stopcodon in wt / mu cDNA 2204 / 2204
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 45 / 45
chromosome 5
strand 1
last intron/exon boundary 1223
theoretical NMD boundary in CDS 1128
length of CDS 2160
coding sequence (CDS) position 1933
cDNA position
(for ins/del: last normal base / first normal base)
1977
gDNA position
(for ins/del: last normal base / first normal base)
130432
chromosomal position
(for ins/del: last normal base / first normal base)
434722
original gDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered gDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
original cDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered cDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
wildtype AA sequence MPRTMIPPGE CTYAGRKRRR PLQKQRPAVG AEKSNPSKRH RDRLNAELDH LASLLPFPPD
IISKLDKLSV LRLSVSYLRV KSFFQVVQEQ SSRQPAAGAP SPGDSCPLAG SAVLEGRLLL
ESLNGFALVV SAEGTIFYAS ATIVDYLGFH QTDVMHQNIY DYIHVDDRQD FCRQLHWAMD
PPQVVFGQPP PLETGDDAIL GRLLRAQEWG TGTPTEYSAF LTRCFICRVR CLLDSTSGFL
ARGSQAWQLR LCCPEPLMTM QFQGKLKFLF GQKKKAPSGA MLPPRLSLFC IAAPVLLPSA
AEMKMRSALL RAKPRADTAA TADAKVKATT SLCESELHGK PNYSAGRSSR ESGVLVLREQ
TDAGRWAQVP ARAPCLCLRG GPDLVLDPKG GSGDREEEQH RMLSRASGVT GRRETPGPTK
PLPWTAGKHS EDGARPRLQP SKNDPPSLRP MPRGSCLPCP CVQGTFRNSP ISHPPSPSPS
AYSSRTSRPM RDVGEDQVHP PLCHFPQRSL QHQLPQPGAQ RFATRGYPME DMKLQGVPMP
PGDLCGPTLL LDVSIKMEKD SGCEGAADGC VPSQVWLGAS DRSHPATFPT RMHLKTEPDS
RQQVYISHLG HGVRGAQPHG RATAGRSREL TPFHPAHCAC LEPTDGLPQS EPPHQLCARG
RGEQSCTCRA AEAAPVVKRE PLDSPQWATH SQGMVPGMLP KSALATLVPP QASGCTFLP*
mutated AA sequence MPRTMIPPGE CTYAGRKRRR PLQKQRPAVG AEKSNPSKRH RDRLNAELDH LASLLPFPPD
IISKLDKLSV LRLSVSYLRV KSFFQVVQEQ SSRQPAAGAP SPGDSCPLAG SAVLEGRLLL
ESLNGFALVV SAEGTIFYAS ATIVDYLGFH QTDVMHQNIY DYIHVDDRQD FCRQLHWAMD
PPQVVFGQPP PLETGDDAIL GRLLRAQEWG TGTPTEYSAF LTRCFICRVR CLLDSTSGFL
ARGSQAWQLR LCCPEPLMTM QFQGKLKFLF GQKKKAPSGA MLPPRLSLFC IAAPVLLPSA
AEMKMRSALL RAKPRADTAA TADAKVKATT SLCESELHGK PNYSAGRSSR ESGVLVLREQ
TDAGRWAQVP ARAPCLCLRG GPDLVLDPKG GSGDREEEQH RMLSRASGVT GRRETPGPTK
PLPWTAGKHS EDGARPRLQP SKNDPPSLRP MPRGSCLPCP CVQGTFRNSP ISHPPSPSPS
AYSSRTSRPM RDVGEDQVHP PLCHFPQRSL QHQLPQPGAQ RFATRGYPME DMKLQGVPMP
PGDLCGPTLL LDVSIKMEKD SGCEGAADGC VPSQVWLGAS DRSHPATFPT RMHLKTEPDS
RQQVYISHLG HGVRGAQPHG RATAGRSREL TPFHPAHCAC LEPTHGLPQS EPPHQLCARG
RGEQSCTCRA AEAAPVVKRE PLDSPQWATH SQGMVPGMLP KSALATLVPP QASGCTFLP*
speed 0.97 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
back to results table
Yum, tasty mutations...

mutation t@sting

documentation

Prediction

polymorphism

Model: simple_aae, prob: 0.999999999999966 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr5:434722G>CN/A show variant in all transcripts   IGV
HGNC symbol AHRR
Ensembl transcript ID ENST00000505113
Genbank transcript ID NM_001242412
UniProt peptide A9YTQ3
alteration type single base exchange
alteration region CDS
DNA changes c.1879G>C
cDNA.1923G>C
g.130432G>C
AA changes D627H Score: 81 explain score(s)
position(s) of altered AA
if AA alteration in CDS
627
frameshift no
known variant Reference ID: rs34453673
databasehomozygous (C/C)heterozygousallele carriers
1000G125526651
ExAC177175539324
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
PolII, Polymerase, RNA Polymerase II
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.3950
0.70.001
(flanking)0.0240
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites no abrogation of potential splice sites
distance from splice site 251
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      627HPAHCACLEPTDGLPQSEPPHQLC
mutated  not conserved    627HPAHCACLEPTHGLPQSEPPHQL
Ptroglodytes  no homologue    
Mmulatta  not conserved  ENSMMUG00000000752  655HPAHCACLEPMHGLAQPEPPHQL
Fcatus  not conserved  ENSFCAG00000015430  594RPAHCACLQHVRGLPEPDPPRHL
Mmusculus  not conserved  ENSMUSG00000021575  633YSAHCTCLDP-------EPPHHFFM
Ggallus  not conserved  ENSGALG00000013402  664CPQNSSACLESLPDQPHTEGYGQFYS
Trubripes  no alignment  ENSTRUG00000003745  n/a
Drerio  no alignment  ENSDARG00000052618  n/a
Dmelanogaster  no alignment  FBgn0003513  n/a
Celegans  no alignment  C41G7.5  n/a
Xtropicalis  no homologue    
protein features
start (aa)end (aa)featuredetails 
551701REGIONNeeded for transcriptional repression (By similarity).lost
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 2106 / 2106
position (AA) of stopcodon in wt / mu AA sequence 702 / 702
position of stopcodon in wt / mu cDNA 2150 / 2150
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now
N/A
position of start ATG in wt / mu cDNA 45 / 45
chromosome 5
strand 1
last intron/exon boundary 1169
theoretical NMD boundary in CDS 1074
length of CDS 2106
coding sequence (CDS) position 1879
cDNA position
(for ins/del: last normal base / first normal base)
1923
gDNA position
(for ins/del: last normal base / first normal base)
130432
chromosomal position
(for ins/del: last normal base / first normal base)
434722
original gDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered gDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
original cDNA sequence snippet GTGCCTGCCTGGAGCCCACAGACGGCCTTCCCCAGTCGGAG
altered cDNA sequence snippet GTGCCTGCCTGGAGCCCACACACGGCCTTCCCCAGTCGGAG
wildtype AA sequence MPRTMIPPGE CTYAGRKRRR PLQKQRPAVG AEKSNPSKRH RDRLNAELDH LASLLPFPPD
IISKLDKLSV LRLSVSYLRV KSFFQVVQEQ SSRQPAAGAP SPGDSCPLAG SAVLEGRLLL
ESLNGFALVV SAEGTIFYAS ATIVDYLGFH QTDVMHQNIY DYIHVDDRQD FCRQLHWAMD
PPQVVFGQPP PLETGDDAIL GRLLRAQEWG TGTPTEYSAF LTRCFICRVR CLLDSTSGFL
TMQFQGKLKF LFGQKKKAPS GAMLPPRLSL FCIAAPVLLP SAAEMKMRSA LLRAKPRADT
AATADAKVKA TTSLCESELH GKPNYSAGRS SRESGVLVLR EQTDAGRWAQ VPARAPCLCL
RGGPDLVLDP KGGSGDREEE QHRMLSRASG VTGRRETPGP TKPLPWTAGK HSEDGARPRL
QPSKNDPPSL RPMPRGSCLP CPCVQGTFRN SPISHPPSPS PSAYSSRTSR PMRDVGEDQV
HPPLCHFPQR SLQHQLPQPG AQRFATRGYP MEDMKLQGVP MPPGDLCGPT LLLDVSIKME
KDSGCEGAAD GCVPSQVWLG ASDRSHPATF PTRMHLKTEP DSRQQVYISH LGHGVRGAQP
HGRATAGRSR ELTPFHPAHC ACLEPTDGLP QSEPPHQLCA RGRGEQSCTC RAAEAAPVVK
REPLDSPQWA THSQGMVPGM LPKSALATLV PPQASGCTFL P*
mutated AA sequence MPRTMIPPGE CTYAGRKRRR PLQKQRPAVG AEKSNPSKRH RDRLNAELDH LASLLPFPPD
IISKLDKLSV LRLSVSYLRV KSFFQVVQEQ SSRQPAAGAP SPGDSCPLAG SAVLEGRLLL
ESLNGFALVV SAEGTIFYAS ATIVDYLGFH QTDVMHQNIY DYIHVDDRQD FCRQLHWAMD
PPQVVFGQPP PLETGDDAIL GRLLRAQEWG TGTPTEYSAF LTRCFICRVR CLLDSTSGFL
TMQFQGKLKF LFGQKKKAPS GAMLPPRLSL FCIAAPVLLP SAAEMKMRSA LLRAKPRADT
AATADAKVKA TTSLCESELH GKPNYSAGRS SRESGVLVLR EQTDAGRWAQ VPARAPCLCL
RGGPDLVLDP KGGSGDREEE QHRMLSRASG VTGRRETPGP TKPLPWTAGK HSEDGARPRL
QPSKNDPPSL RPMPRGSCLP CPCVQGTFRN SPISHPPSPS PSAYSSRTSR PMRDVGEDQV
HPPLCHFPQR SLQHQLPQPG AQRFATRGYP MEDMKLQGVP MPPGDLCGPT LLLDVSIKME
KDSGCEGAAD GCVPSQVWLG ASDRSHPATF PTRMHLKTEP DSRQQVYISH LGHGVRGAQP
HGRATAGRSR ELTPFHPAHC ACLEPTHGLP QSEPPHQLCA RGRGEQSCTC RAAEAAPVVK
REPLDSPQWA THSQGMVPGM LPKSALATLV PPQASGCTFL P*
speed 1.03 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
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Problems