Yum, tasty mutations...

mutation t@sting

 documentation

Prediction

polymorphism

 Model: simple_aae, prob: 0.999999999999465 (classification due to TGP/ExAC, real probability is shown anyway)      (explain)
Summary
  • amino acid sequence changed
  • homozygous in TGP or ExAC
  • protein features (might be) affected
  • splice site changes
 hyperlink
analysed issue analysis result
name of alteration no title
alteration (phys. location) chr10:123996976G>AN/A show variant in all transcripts   IGV
HGNC symbol TACC2
Ensembl transcript ID ENST00000515603
Genbank transcript ID N/A
UniProt peptide O95359
alteration type single base exchange
alteration region CDS
DNA changes c.7828G>A
cDNA.8156G>A
g.248288G>A
AA changes A2610T Score: 58 explain score(s)
position(s) of altered AA
if AA alteration in CDS		 2610
frameshift no
known variant Reference ID: rs2295879
databasehomozygous (A/A)heterozygousallele carriers
1000G1949601154
ExAC58432108126924
regulatory features H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation
phyloP / phastCons
PhyloPPhastCons
(flanking)-0.8910
-0.3820.001
(flanking)3.6840.031
explain score(s) and/or inspect your position(s) in in UCSC Genome Browser
splice sites
effectgDNA positionscorewt detection sequence exon-intron border
Acc increased248278wt: 0.55 / mu: 0.61wt: AAAACAGCCTTGTACTCCCGCATCGGGACCGCTGAGGTGGA
mu: AAAACAGCCTTGTACTCCCGCATCGGGACCACTGAGGTGGA		 ccgc|ATCG
Acc marginally increased248282wt: 0.8313 / mu: 0.8516 (marginal change - not scored)wt: CAGCCTTGTACTCCCGCATCGGGACCGCTGAGGTGGAGAAA
mu: CAGCCTTGTACTCCCGCATCGGGACCACTGAGGTGGAGAAA		 atcg|GGAC
Donor increased248288wt: 0.40 / mu: 0.91wt: GGACCGCTGAGGTGG
mu: GGACCACTGAGGTGG		 ACCG|ctga
Donor marginally increased248293wt: 0.9307 / mu: 0.9811 (marginal change - not scored)wt: GCTGAGGTGGAGAAA
mu: ACTGAGGTGGAGAAA		 TGAG|gtgg
Donor gained2482900.44mu: ACCACTGAGGTGGAG CACT|gagg
distance from splice site 67
Kozak consensus sequence altered? N/A
conservation
protein level for non-synonymous changes
speciesmatchgeneaaalignment
Human      2610SKTALYSRIGTAEVEKPAGLLFQQ
mutated  not conserved    2610SKTALYSRIGTTEVEKPAGLLFQ
Ptroglodytes  not conserved  ENSPTRG00000003008  2635SADALLSRLAHPASLCGALDYLEPDLAEKNPPLFAQ
Mmulatta  not conserved  ENSMMUG00000013033  2634SADALLSRLAHPASLCGALDYLEPDLAEKNPPLFAQ
Fcatus  all identical  ENSFCAG00000003650  2548CGALDYLEPDLAEKNPPVFAQKL
Mmusculus  not conserved  ENSMUSG00000030852  2586SRLAHPASLCGALGYLEPDLAEKNPPVFAQ
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  not conserved  ENSDARG00000062790  1085SKGSLYSRTGYIEGESP----HL
Dmelanogaster  not conserved  FBgn0026620  1079DRTKKHVKMSVDVIDNDCNKTFD
Celegans  no homologue    
Xtropicalis  not conserved  ENSXETG00000015587  683AAETLLSRI-----SQQAALCDQ
protein features
start (aa)end (aa)featuredetails 
26752703COILEDPotential.might get lost (downstream of altered splice site)
27462947COILEDPotential.might get lost (downstream of altered splice site)
28842884MOD_RESN6-acetyllysine.might get lost (downstream of altered splice site)
28962896CONFLICTR -> Q (in Ref. 3; AAO62629/AAO62630).might get lost (downstream of altered splice site)
29092909CONFLICTS -> T (in Ref. 5; AAH39311).might get lost (downstream of altered splice site)
length of protein normal
AA sequence altered yes
position of stopcodon in wt / mu CDS 8481 / 8481
position (AA) of stopcodon in wt / mu AA sequence 2827 / 2827
position of stopcodon in wt / mu cDNA 8809 / 8809
poly(A) signal N/A
conservation
nucleotide level for all changes - no scoring up to now		 N/A
position of start ATG in wt / mu cDNA 329 / 329
chromosome 10
strand 1
last intron/exon boundary 8744
theoretical NMD boundary in CDS 8365
length of CDS 8481
coding sequence (CDS) position 7828
cDNA position
(for ins/del: last normal base / first normal base)		 8156
gDNA position
(for ins/del: last normal base / first normal base)		 248288
chromosomal position
(for ins/del: last normal base / first normal base)		 123996976
original gDNA sequence snippet TGTACTCCCGCATCGGGACCGCTGAGGTGGAGAAACCTGCA
altered gDNA sequence snippet TGTACTCCCGCATCGGGACCACTGAGGTGGAGAAACCTGCA
original cDNA sequence snippet TGTACTCCCGCATCGGGACCGCTGAGGTGGAGAAACCTGCA
altered cDNA sequence snippet TGTACTCCCGCATCGGGACCACTGAGGTGGAGAAACCTGCA
wildtype AA sequence MGNENSTSDN QRTLSAQTPR SAQPPGNSQN IKRKQQDTPG SPDHRDASSI GSVGLGGFCT
ASESSASLDP CLVSPEVTEP RKDPQGARGP EGSLLPSPPP SQEREHPSSS MPFAECPPEG
CLASPAAAPE DGPQTQSPRR EPAPNAPGDI AAAFPAERDS STPYQEIAAV PSAGRERQPK
EEGQKSSFSF SSGIDQSPGM SPVPLREPMK APLCGEGDQP GGFESQEKEA AGGFPPAESR
QGVASVQVTP EAPAAAQQGT ESSAVLEKSP LKPMAPIPQD PAPRASDRER GQGEAPPQYL
TDDLEFLRAC HLPRSNSGAA PEAEVNAASQ ESCQQPVGAY LPHAELPWGL PSPALVPEAG
GSGKEALDTI DVQGHPQTGM RGTKPNQVVC VAAGGQPEGG LPVSPEPSLL TPTEEAHPAS
SLASFPAAQI PIAVEEPGSS SRESVSKAGM PVSADAAKEV VDAGLVGLER QVSDLGSKGE
HPEGDPGEVP APSPQERGEH LNTEQSHEVQ PGVPPPPLPK EQSHEVQPGA PPPPLPKAPS
ESARGPPGPT DGAKVHEDST SPAVAKEGSR SPGDSPGGKE EAPEPPDGGD PGNLQGEDSQ
AFSSKRDPEV GKDELSKPSS DAESRDHPSS HSAQPPRKGG AGHTDGPHSQ TAEADASGLP
HKLGEEDPVL PPVPDGAGEP TVPEGAIWEG SGLQPKCPDT LQSREGLGRM ESFLTLESEK
SDFPPTPVAE VAPKAQEGES TLEIRKMGSC DGEGLLTSPD QPRGPACDAS RQEFHAGVPH
PPQGENLAAD LGLTALILDQ DQQGIPSCPG EGWIRGAASE WPLLSSEKHL QPSQAQPETS
IFDVLKEQAQ PPENGKETSP SHPGFKDQGA DSSQIHVPVE PQEDNNLPTH GGQEQALGSE
LQSQLPKGTL SDTPTSSPTD MVWESSLTEE SELSAPTRQK LPALGEKRPE GACGDGQSSR
VSPPAADVLK DFSLAGNFSR KETCCTGQGP NKSQQALADA LEEGSQHEEA CQRHPGASEA
ADGCSPLWGL SKREMASGNT GEAPPCQPDS VALLDAVPCL PALAPASPGV TPTQDAPETE
ACDETQEGRQ QPVPAPQQKM ECWATSDAES PKLLASFPSA GEQGGEAGAA ETGGSAGAGD
PGKQQAPEKP GEATLSCGLL QTEHCLTSGE EASTSALRES CQAEHPMASC QDALLPAREL
GGIPRSTMDF STHQAVPDPK ELLLSGPPEV AAPDTPYLHV DSAAQRGAED SGVKAVSSAD
PRAPGESPCP VGEPPLALEN AASLKLFAGS LAPLLQPGAA GGEIPAVQAS SGSPKARTTE
GPVDSMPCLD RMPLLAKGKQ ATGEEKAATA PGAGAKASGE GMAGDAAGET EGSMERMGEP
SQDPKQGTSG GVDTSSEQIA TLTGFPDFRE HIAKIFEKPV LGALATPGEK AGAGRSAVGK
DLTRPLGPEK LLDGPPGVDV TLLPAPPARL QVEKKQQLAG EAEISHLALQ DPASDKLLGP
AGLTWERNLP GAGVGKEMAG VPPTLREDER PEGPGAAWPG LEGQAYSQLE RSRQELASGL
PSPAATQELP VERAAAFQVA PHSHGEEAVA QDRIPSGKQH QETSACDSPH GEDGPGDFAH
TGVPGHVPRS TCAPSPQREV LTVPEANSEP WTLDTLGGER RPGVTAGILE MRNALGNQST
PAPPTGEVAD TPLEPGKVAG AAGEAEGDIT LSTAETQACA SGDLPEAGTT RTFSVVAGDL
VLPGSCQDPA CSDKAPGMEG TAALHGDSPA RPQQAKEQPG PERPIPAGDG KVCVSSPPEP
DETHDPKLQH LAPEELHTDR ESPRPGPSML PSVPKKDAPR VMDKVTSDET RGAEGTESSP
VADDIIQPAA PADLESPTLA ASSYHGDVVG QVSTDLIAQR SSDSEEAFET PESTTPVKAP
PAPPPPPPEV IPEPEVSTQP PPEEPGCGSE TVPVPDGPRS DSVEGSPFRP PSHSFSAVFD
EDKPIASSGT YNLDFDNIEL VDTFQTLEPR ASDAKNQEGK VNTRRKSTDS VPISKSTLSR
SLSLQASDFD GASSSGNPEA VALAPDAYST GSSSASSTLK RTKKPRPPSL KKKQTTKKPT
ETPPVKETQQ EPDEESLVPS GENLASETKT ESAKTEGPSP ALLEETPLEP AVGPKAACPL
DSESAEGVVP PASGGGRVQN SPPVGRKTLP LTTAPEAGEV TPSDSGGQED SPAKGLSVRL
EFDYSEDKSS WDNQQENPPP TKKIGKKPVA KMPLRRPKMK KTPEKLDNTP ASPPRSPAEP
NDIPIAKGTY TFDIDKWDDP NFNPFSSTSK MQESPKLPQQ SYNFDPDTCD ESVDPFKTSS
KTPSSPSKSP ASFEIPASAM EANGVDGDGL NKPAKKKKTP LKTDTFRVKK SPKRSPLSDP
PSQDPTPAAT PETPPVISAV VHATDEEKLA VTNQKWTCMT VDLEADKQDY PQPSDLSTFV
NETKFSSPTE ELDYRNSYEI EYMEKIGSSL PQDDDAPKKQ ALYLMFDTSQ ESPVKSSPVR
MSESPTPCSG SSFEETEALV NTAAKNQHPV PRGLAPNQES HLQVPEKSSQ KELEAMGLGT
PSEAIEIREA AHPTDVSISK TALYSRIGTA EVEKPAGLLF QQPDLDSALQ IARAEIITKE
REVSEWKDKY EESRREVMEM RKIVAEYEKT IAQMIEDEQR EKSVSHQTVQ QLVLEKEQAL
ADLNSVEKSL ADLFRRYEKM KEVLEGFRKN EEVLKRCAQE YLSRVKKEEQ RYQALKVHAE
EKLDRANAEI AQVRGKAQQE QAAHQASLRK EQLRVDALER TLEQKNKEIE ELTKICDELI
AKMGKS*
mutated AA sequence MGNENSTSDN QRTLSAQTPR SAQPPGNSQN IKRKQQDTPG SPDHRDASSI GSVGLGGFCT
ASESSASLDP CLVSPEVTEP RKDPQGARGP EGSLLPSPPP SQEREHPSSS MPFAECPPEG
CLASPAAAPE DGPQTQSPRR EPAPNAPGDI AAAFPAERDS STPYQEIAAV PSAGRERQPK
EEGQKSSFSF SSGIDQSPGM SPVPLREPMK APLCGEGDQP GGFESQEKEA AGGFPPAESR
QGVASVQVTP EAPAAAQQGT ESSAVLEKSP LKPMAPIPQD PAPRASDRER GQGEAPPQYL
TDDLEFLRAC HLPRSNSGAA PEAEVNAASQ ESCQQPVGAY LPHAELPWGL PSPALVPEAG
GSGKEALDTI DVQGHPQTGM RGTKPNQVVC VAAGGQPEGG LPVSPEPSLL TPTEEAHPAS
SLASFPAAQI PIAVEEPGSS SRESVSKAGM PVSADAAKEV VDAGLVGLER QVSDLGSKGE
HPEGDPGEVP APSPQERGEH LNTEQSHEVQ PGVPPPPLPK EQSHEVQPGA PPPPLPKAPS
ESARGPPGPT DGAKVHEDST SPAVAKEGSR SPGDSPGGKE EAPEPPDGGD PGNLQGEDSQ
AFSSKRDPEV GKDELSKPSS DAESRDHPSS HSAQPPRKGG AGHTDGPHSQ TAEADASGLP
HKLGEEDPVL PPVPDGAGEP TVPEGAIWEG SGLQPKCPDT LQSREGLGRM ESFLTLESEK
SDFPPTPVAE VAPKAQEGES TLEIRKMGSC DGEGLLTSPD QPRGPACDAS RQEFHAGVPH
PPQGENLAAD LGLTALILDQ DQQGIPSCPG EGWIRGAASE WPLLSSEKHL QPSQAQPETS
IFDVLKEQAQ PPENGKETSP SHPGFKDQGA DSSQIHVPVE PQEDNNLPTH GGQEQALGSE
LQSQLPKGTL SDTPTSSPTD MVWESSLTEE SELSAPTRQK LPALGEKRPE GACGDGQSSR
VSPPAADVLK DFSLAGNFSR KETCCTGQGP NKSQQALADA LEEGSQHEEA CQRHPGASEA
ADGCSPLWGL SKREMASGNT GEAPPCQPDS VALLDAVPCL PALAPASPGV TPTQDAPETE
ACDETQEGRQ QPVPAPQQKM ECWATSDAES PKLLASFPSA GEQGGEAGAA ETGGSAGAGD
PGKQQAPEKP GEATLSCGLL QTEHCLTSGE EASTSALRES CQAEHPMASC QDALLPAREL
GGIPRSTMDF STHQAVPDPK ELLLSGPPEV AAPDTPYLHV DSAAQRGAED SGVKAVSSAD
PRAPGESPCP VGEPPLALEN AASLKLFAGS LAPLLQPGAA GGEIPAVQAS SGSPKARTTE
GPVDSMPCLD RMPLLAKGKQ ATGEEKAATA PGAGAKASGE GMAGDAAGET EGSMERMGEP
SQDPKQGTSG GVDTSSEQIA TLTGFPDFRE HIAKIFEKPV LGALATPGEK AGAGRSAVGK
DLTRPLGPEK LLDGPPGVDV TLLPAPPARL QVEKKQQLAG EAEISHLALQ DPASDKLLGP
AGLTWERNLP GAGVGKEMAG VPPTLREDER PEGPGAAWPG LEGQAYSQLE RSRQELASGL
PSPAATQELP VERAAAFQVA PHSHGEEAVA QDRIPSGKQH QETSACDSPH GEDGPGDFAH
TGVPGHVPRS TCAPSPQREV LTVPEANSEP WTLDTLGGER RPGVTAGILE MRNALGNQST
PAPPTGEVAD TPLEPGKVAG AAGEAEGDIT LSTAETQACA SGDLPEAGTT RTFSVVAGDL
VLPGSCQDPA CSDKAPGMEG TAALHGDSPA RPQQAKEQPG PERPIPAGDG KVCVSSPPEP
DETHDPKLQH LAPEELHTDR ESPRPGPSML PSVPKKDAPR VMDKVTSDET RGAEGTESSP
VADDIIQPAA PADLESPTLA ASSYHGDVVG QVSTDLIAQR SSDSEEAFET PESTTPVKAP
PAPPPPPPEV IPEPEVSTQP PPEEPGCGSE TVPVPDGPRS DSVEGSPFRP PSHSFSAVFD
EDKPIASSGT YNLDFDNIEL VDTFQTLEPR ASDAKNQEGK VNTRRKSTDS VPISKSTLSR
SLSLQASDFD GASSSGNPEA VALAPDAYST GSSSASSTLK RTKKPRPPSL KKKQTTKKPT
ETPPVKETQQ EPDEESLVPS GENLASETKT ESAKTEGPSP ALLEETPLEP AVGPKAACPL
DSESAEGVVP PASGGGRVQN SPPVGRKTLP LTTAPEAGEV TPSDSGGQED SPAKGLSVRL
EFDYSEDKSS WDNQQENPPP TKKIGKKPVA KMPLRRPKMK KTPEKLDNTP ASPPRSPAEP
NDIPIAKGTY TFDIDKWDDP NFNPFSSTSK MQESPKLPQQ SYNFDPDTCD ESVDPFKTSS
KTPSSPSKSP ASFEIPASAM EANGVDGDGL NKPAKKKKTP LKTDTFRVKK SPKRSPLSDP
PSQDPTPAAT PETPPVISAV VHATDEEKLA VTNQKWTCMT VDLEADKQDY PQPSDLSTFV
NETKFSSPTE ELDYRNSYEI EYMEKIGSSL PQDDDAPKKQ ALYLMFDTSQ ESPVKSSPVR
MSESPTPCSG SSFEETEALV NTAAKNQHPV PRGLAPNQES HLQVPEKSSQ KELEAMGLGT
PSEAIEIREA AHPTDVSISK TALYSRIGTT EVEKPAGLLF QQPDLDSALQ IARAEIITKE
REVSEWKDKY EESRREVMEM RKIVAEYEKT IAQMIEDEQR EKSVSHQTVQ QLVLEKEQAL
ADLNSVEKSL ADLFRRYEKM KEVLEGFRKN EEVLKRCAQE YLSRVKKEEQ RYQALKVHAE
EKLDRANAEI AQVRGKAQQE QAAHQASLRK EQLRVDALER TLEQKNKEIE ELTKICDELI
AKMGKS*
speed 0.99 s
All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project